View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_low_21 (Length: 337)
Name: NF1709_low_21
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 37529118 - 37528810
Alignment:
| Q |
13 |
aatattttgcaaaaccaatataattgaaaccatgtttttaggagcttggtttcaatagaactgaacgaacacttcctattggcactaccgtaacagttgt |
112 |
Q |
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| T |
37529118 |
aatattttgcaaaaccaatataattgaaaccatgtttttaggagcttggtttcaatagaactgaacgaacacttcctattggcactaccgtaacagttgt |
37529019 |
T |
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| Q |
113 |
tggtgaggtaagttgttctaaacttgtgtttccatttttatatatggtctccttatgtttcaatattaaaagggattgttgtcgactaatcaatcatttt |
212 |
Q |
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| T |
37529018 |
tggtgaggtaagttgttctaaacttgtgttttcatttttatatatggtctccttatgtttcaatattaaaagggattgttgtcgactaatcaatcatttt |
37528919 |
T |
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| Q |
213 |
taaatatttctttggaaatatttttaaactttacgatcaggttactaaagatgatgctggcgccattcggattcaacaaccccgcacaggaccattttat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37528918 |
taaatatttctttggaaatatttttaaactttacgatcaggttactaaagatgatgctggcgccattcggattcaacaaccccgcacaggaccattttat |
37528819 |
T |
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| Q |
313 |
gtctctccc |
321 |
Q |
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||||||||| |
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| T |
37528818 |
gtctctccc |
37528810 |
T |
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