View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1709_low_22 (Length: 336)

Name: NF1709_low_22
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1709_low_22
NF1709_low_22
[»] chr5 (5 HSPs)
chr5 (1-319)||(41249261-41249585)
chr5 (1-103)||(29069477-29069580)
chr5 (25-93)||(26708330-26708399)
chr5 (25-93)||(26978064-26978133)
chr5 (34-101)||(7032937-7033005)
[»] chr3 (5 HSPs)
chr3 (16-102)||(54378395-54378482)
chr3 (6-103)||(11559843-11559941)
chr3 (6-103)||(11569112-11569210)
chr3 (34-97)||(50093671-50093735)
chr3 (33-93)||(22604492-22604553)
[»] chr1 (5 HSPs)
chr1 (15-103)||(28007580-28007669)
chr1 (37-102)||(33372293-33372359)
chr1 (4-103)||(25878795-25878895)
chr1 (6-70)||(10917708-10917772)
chr1 (19-102)||(30936705-30936785)
[»] chr8 (4 HSPs)
chr8 (4-103)||(15075278-15075378)
chr8 (1-103)||(4975596-4975699)
chr8 (34-103)||(20990957-20991027)
chr8 (37-93)||(2751481-2751538)
[»] chr2 (3 HSPs)
chr2 (6-108)||(8907806-8907907)
chr2 (15-103)||(29454480-29454569)
chr2 (33-103)||(30870132-30870203)
[»] chr4 (1 HSPs)
chr4 (15-92)||(22433607-22433685)
[»] chr7 (2 HSPs)
chr7 (33-103)||(8543597-8543666)
chr7 (6-103)||(42594529-42594627)
[»] scaffold0092 (1 HSPs)
scaffold0092 (15-84)||(54107-54176)
[»] chr6 (1 HSPs)
chr6 (111-195)||(12062521-12062605)


Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 41249585 - 41249261
Alignment:
Q  1 agagatcaaattaaatatatataaaattttaagttaaaaatacaatacacatgcggagacaagtggggtcgcttgaccc-attgcccccacattagatcc 99  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||| ||||||||||| |||||||| |||| |||||||||||||||    
T  41249585 agagatcaaattaaatatatataaaattttgggttaaaaatacaatacacatgtggaggcaagtggggtcacttgaccccattgtccccacattagatcc 41249486  T
Q  100 gtgcatggggtgagcaacacctcatccaaggaagtaaaacggtttagtgactatttgaagaccaattaccttttcccttcacttgaagaaacctcg---- 195  Q
    |||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||        
T  41249485 gtgcctggggtgagcaacacctcatccaacgaagtaaaatggtttagtgactatttgaagaccaattaccttttcccttcatttgaagaaacctcgattc 41249386  T
Q  196 -caggcatgcatgatttcaactaacgaacctgcactttttatactggtatcaatagagctgtaatccgattttttatatatagtttttaatccctagtct 294  Q
     |||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  41249385 gcaggcatgcatgattttacctaacgaacctgcactttttatactggtatgaatagagctgtaatcagattttttacatatagtttttaatccctagtct 41249286  T
Q  295 cattttagagagagaaaaagagcaa 319  Q
    |||||||||||||||||||||||||    
T  41249285 cattttagagagagaaaaagagcaa 41249261  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 29069477 - 29069580
Alignment:
Q  1 agagatcaaattaaatatatataaaattttaagttaaaaatacaatacacatgcggagacaagtggggtcgcttga-cccattgcccccacattagatcc 99  Q
    |||| ||||| |||||||||||  ||||||  |||||||||||||||| |||| |||| ||||||||||||||||| ||||||||||||||| ||||||     
T  29069477 agaggtcaaactaaatatatatctaattttgggttaaaaatacaatacccatgtggaggcaagtggggtcgcttgaccccattgcccccacactagatct 29069576  T
Q  100 gtgc 103  Q
    ||||    
T  29069577 gtgc 29069580  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 26708399 - 26708330
Alignment:
Q  25 aattttaagttaaaaatacaatacacatgcggagacaagtggggtcgcttga-cccattgcccccacatt 93  Q
    |||||||  |||||||||||||||||| | |||| ||||||||||| ||||| |||||||||| ||||||    
T  26708399 aattttagattaaaaatacaatacacaagaggaggcaagtggggtcacttgaccccattgccctcacatt 26708330  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 26978133 - 26978064
Alignment:
Q  25 aattttaagttaaaaatacaatacacatgcggagacaagtggggtcgcttga-cccattgcccccacatt 93  Q
    |||||||  |||||||||||||||||| | |||| ||||||||||| ||||| |||||||||| ||||||    
T  26978133 aattttagattaaaaatacaatacacaagaggaggcaagtggggtcacttgaccccattgccctcacatt 26978064  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 7032937 - 7033005
Alignment:
Q  34 ttaaaaatacaatacacatgcggagacaagtggggtcgcttga-cccattgcccccacattagatccgt 101  Q
    |||||||||||||| ||| | |||| |||||||||||| |||| ||||||||||||||| || ||||||    
T  7032937 ttaaaaatacaataaacaagtggaggcaagtggggtcggttgaccccattgcccccacactacatccgt 7033005  T

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Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 54378395 - 54378482
Alignment:
Q  16 tatatataaaattttaagttaaaaatacaatacacatgcggagacaagtggggtcgcttga-cccattgcccccacattagatccgtg 102  Q
    |||||||| ||||||  ||||||||||||||||||||| |||| ||||||||||||||||| ||||||| ||||||| ||||||||||    
T  54378395 tatatatataattttgggttaaaaatacaatacacatgtggaggcaagtggggtcgcttgaccccattgtccccacactagatccgtg 54378482  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 11559843 - 11559941
Alignment:
Q  6 tcaaattaaatatatataaaattttaagttaaaaatacaatacacatgcggagacaagtggggtcgcttgaccc-attgcccccacattagatccgtgc 103  Q
    ||||| || ||||||||  ||||||  ||||||||||||||||||||| ||||  ||||||||||||||||||| ||||||| |||| |||||||||||    
T  11559843 tcaaactagatatatatctaattttgggttaaaaatacaatacacatgtggaggtaagtggggtcgcttgacccgattgcccacacactagatccgtgc 11559941  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 11569112 - 11569210
Alignment:
Q  6 tcaaattaaatatatataaaattttaagttaaaaatacaatacacatgcggagacaagtggggtcgcttgaccc-attgcccccacattagatccgtgc 103  Q
    ||||| || ||||||||  ||||||  ||||||||||||||||||||| ||||  ||||||||||||||||||| ||||||| |||| |||||||||||    
T  11569112 tcaaactagatatatatctaattttgggttaaaaatacaatacacatgtggaggtaagtggggtcgcttgacccgattgcccacacactagatccgtgc 11569210  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 50093671 - 50093735
Alignment:
Q  34 ttaaaaatacaatacacatgcggagacaagtggggtcgcttga-cccattgcccccacattagat 97  Q
    |||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| |||||    
T  50093671 ttaaaaatacaatacacatgtggaggcaagtggggtcgcttgaccccattgcccccacactagat 50093735  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 22604492 - 22604553
Alignment:
Q  33 gttaaaaatacaatacacatgcggagacaagtggggtcgcttga-cccattgcccccacatt 93  Q
    ||||||||| ||||||||| | |||| ||||||||||||||||| |||||||||||||||||    
T  22604492 gttaaaaatgcaatacacaagtggaggcaagtggggtcgcttgaccccattgcccccacatt 22604553  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 28007580 - 28007669
Alignment:
Q  15 atatatataaaattttaagttaaaaatacaatacacatgcggagacaagtggggtcgcttgac-ccattgcccccacattagatccgtgc 103  Q
    ||||||||  |||||| ||||||||||||| |||||||| |||| |||||||||| ||||||| |||||||||||||| |||||||||||    
T  28007580 atatatatctaattttgagttaaaaatacagtacacatgtggaggcaagtggggtggcttgactccattgcccccacactagatccgtgc 28007669  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 33372359 - 33372293
Alignment:
Q  37 aaaatacaatacacatgcggagacaagtggggtcgcttga-cccattgcccccacattagatccgtg 102  Q
    ||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||  ||||||||||    
T  33372359 aaaatacaatacacatgtggaggcaagtggggtcgcttgaccccattgcccccaccctagatccgtg 33372293  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 25878795 - 25878895
Alignment:
Q  4 gatcaaattaaatatatataaaattttaagttaaaaatacaatacacatgcggagacaagtggggtcgcttga-cccattgcccccacattagatccgtg 102  Q
    |||||||||| | ||||||  ||||||  ||||||||| ||||| ||| | |||| ||||||||||||||||| |||||||| ||||||||  |||||||    
T  25878795 gatcaaattagacatatatttaattttgggttaaaaatgcaatatacaagtggaggcaagtggggtcgcttgaccccattgctcccacattgtatccgtg 25878894  T
Q  103 c 103  Q
    |    
T  25878895 c 25878895  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 10917772 - 10917708
Alignment:
Q  6 tcaaattaaatatatataaaattttaagttaaaaatacaatacacatgcggagacaagtggggtc 70  Q
    ||||| ||||| |||||  ||||||| |||||||||| |||||||||| |||| |||||||||||    
T  10917772 tcaaactaaatctatatctaattttaggttaaaaatataatacacatgtggaggcaagtggggtc 10917708  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 30936785 - 30936705
Alignment:
Q  19 atataaaattttaagttaaaaatacaatacacatgcggagacaagtggggtcgcttgac-ccattgcccccacattagatccgtg 102  Q
    |||| |||||||| |||||||||||||    || | |||| |||||||||||| ||||| |||||||||||||||| ||||||||    
T  30936785 atatcaaattttaggttaaaaatacaa----caagtggaggcaagtggggtcggttgactccattgcccccacattggatccgtg 30936705  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 15075378 - 15075278
Alignment:
Q  4 gatcaaattaaatatatataaaattttaagttaaaaatacaatacacatgcggagacaagtggggtcgcttga-cccattgcccccacattagatccgtg 102  Q
    ||||||| || ||||||||  ||||||  ||||||||| ||||||||| | |||| ||||||||||||||||| |||||||||||||||||  |||||||    
T  15075378 gatcaaactagatatatatctaattttgggttaaaaatgcaatacacaagtggaggcaagtggggtcgcttgaccccattgcccccacattgtatccgtg 15075279  T
Q  103 c 103  Q
    |    
T  15075278 c 15075278  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 4975596 - 4975699
Alignment:
Q  1 agagatcaaattaaatatatataaaattttaagttaaaaatacaatacacatgcggagacaagtggggtcgcttga-cccattgcccccacattagatcc 99  Q
    |||| |||||||| | ||||||  ||||||  ||||||||||||||||||| | ||| |||||||||||||||||| ||||||||||||| |||  ||||    
T  4975596 agaggtcaaattagacatatatttaattttgggttaaaaatacaatacacaagtggatacaagtggggtcgcttgaccccattgcccccatattgtatcc 4975695  T
Q  100 gtgc 103  Q
    ||||    
T  4975696 gtgc 4975699  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 20990957 - 20991027
Alignment:
Q  34 ttaaaaatacaatacacatgcggagacaagtggggtcgcttga-cccattgcccccacattagatccgtgc 103  Q
    |||||| ||||||||||||| |||| ||||||||||||||||| ||| ||||||||||| |||||||||||    
T  20990957 ttaaaagtacaatacacatgtggaggcaagtggggtcgcttgaccccgttgcccccacactagatccgtgc 20991027  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 2751538 - 2751481
Alignment:
Q  37 aaaatacaatacacatgcggagacaagtggggtcgcttga-cccattgcccccacatt 93  Q
    ||||||||||||||| | |||| ||||||||||||||||| |||||||||||||||||    
T  2751538 aaaatacaatacacaggtggaggcaagtggggtcgcttgaccccattgcccccacatt 2751481  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 8907907 - 8907806
Alignment:
Q  6 tcaaattaaatatatataaaattttaagttaaaaatacaatacacatgcggagacaagtggggtcgcttga-cccattgcccccacattagatccgtgca 104  Q
    ||||| |||||||||||  ||||||  ||||||||| ||||||||||| |||| ||||||||||||||||| |||||||  |||||| |||||||||||     
T  8907907 tcaaactaaatatatatctaattttgggttaaaaattcaatacacatgtggaggcaagtggggtcgcttgaccccattg--cccacactagatccgtgcc 8907810  T
Q  105 tggg 108  Q
    ||||    
T  8907809 tggg 8907806  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 29454480 - 29454569
Alignment:
Q  15 atatatataaaattttaagttaaaaatacaatacacatgcggagacaagtggggtcgcttga-cccattgcccccacattagatccgtgc 103  Q
    ||||||||| ||||||  ||||||||||||||||||||  | || ||||||||||||||||| |||||||| |||||| ||||| |||||    
T  29454480 atatatatataattttgggttaaaaatacaatacacatttgaaggcaagtggggtcgcttgaccccattgctcccacactagattcgtgc 29454569  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 30870203 - 30870132
Alignment:
Q  33 gttaaaaatacaatacacatgcggagacaagtggggtcgcttga-cccattgcccccacattagatccgtgc 103  Q
    ||||||||| ||||||||| | | || ||||||||||| ||||| |||||||||||||||||  ||||||||    
T  30870203 gttaaaaatgcaatacacaagtgaaggcaagtggggtcacttgaccccattgcccccacattgtatccgtgc 30870132  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 22433685 - 22433607
Alignment:
Q  15 atatatataaaattttaagttaaaaatacaatacacatgcggagacaagtggggtcgcttga-cccattgcccccacat 92  Q
    ||||||||| ||||||  ||||||||||||||| ||| | |||| ||||||||||||||||| ||||||||||||||||    
T  22433685 atatatatataattttgggttaaaaatacaataaacaggtggaggcaagtggggtcgcttgaccccattgcccccacat 22433607  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 8543666 - 8543597
Alignment:
Q  33 gttaaaaatacaatacacatgcggagacaagtggggtcgcttgacccattgcccccacattagatccgtgc 103  Q
    ||||||||||||||||| ||  | || |||||||||||||||||||||||  ||||||| ||||| |||||    
T  8543666 gttaaaaatacaataca-atatgaaggcaagtggggtcgcttgacccattatccccacactagattcgtgc 8543597  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 42594529 - 42594627
Alignment:
Q  6 tcaaattaaatatatataaaattttaagttaaaaatacaatacacatgcggagacaagtggggtcgcttga-cccattgcccccacattagatccgtgc 103  Q
    ||||| || ||| |||| ||| |||| |||||||||||||||  || | |||| |||||||||||| |||| ||||||||| ||||||| |||| ||||    
T  42594529 tcaaactacataaatatcaaaatttaggttaaaaatacaataagcaagtggaggcaagtggggtcggttgaccccattgccaccacattggatctgtgc 42594627  T

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Target: scaffold0092 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 54107 - 54176
Alignment:
Q  15 atatatataaaattttaagttaaaaatacaatacacatgcggagacaagtggggtcgcttgacccattgc 84  Q
    |||||||| ||||||||| |||||||||||||||| ||| | || ||| ||  |||| ||||||||||||    
T  54107 atatatatcaaattttaaattaaaaatacaatacatatgtgaaggcaaatgaagtcgtttgacccattgc 54176  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 195
Target Start/End: Complemental strand, 12062605 - 12062521
Alignment:
Q  111 gagcaacacctcatccaaggaagtaaaacggtttagtgactatttgaagaccaattaccttttcccttcacttgaagaaacctcg 195  Q
    ||||||||| || ||||| ||| |||  || ||||||||||||| ||||||||| | | |||||| | || ||||||||||||||    
T  12062605 gagcaacacttcttccaacgaactaaggcgatttagtgactattagaagaccaactgcattttccttccaattgaagaaacctcg 12062521  T

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