View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_low_25 (Length: 325)
Name: NF1709_low_25
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_25 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 325
Target Start/End: Original strand, 219163 - 219468
Alignment:
| Q |
11 |
caaaggcgggttgcatgcattgaagttgtacaaaagtaaatcaatttaaagagaaaatgcaaaaggatgaataaaatgagaaacataccttaaataagac |
110 |
Q |
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| T |
219163 |
caaaggcgggttgcatgcattgaagttgtacaaaagtaaatcaatttaaagagaaaatgcaaaaggatgaataaaatgagaaacataccttaaataagac |
219262 |
T |
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| Q |
111 |
agagcaaagatgaagatcaatcaatgtatgaggaaaagaaaaccctagcttaacttagctgagttgagcttttagcaaggagagtgataaatgttnnnnn |
210 |
Q |
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| T |
219263 |
agagcaaagatgaagatcaatcaatgtatgaggaaaagaaaaccctagcttaacttagctgagttgagc-tttagcaaggagagtgataaatgtt----- |
219356 |
T |
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| Q |
211 |
nnnnnnnnnnnnntctatgttatttgtttgaaatatcatttcccactgaaagatagaaagaaagaaaaagacaagttaacacatnnnnnnnntggcagta |
310 |
Q |
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||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| |||| ||| |||| |
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| T |
219357 |
---agagagagagtctatgtgatttgtttgaaatatcatttcccaatgaaagaaagaaagaaagaaaaagaaaagttaaaacataaaaaaaatggtagta |
219453 |
T |
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| Q |
311 |
aatgcgtttattagc |
325 |
Q |
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||||||||||||||| |
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| T |
219454 |
aatgcgtttattagc |
219468 |
T |
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