View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_low_26 (Length: 323)
Name: NF1709_low_26
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 37 - 310
Target Start/End: Complemental strand, 30994407 - 30994134
Alignment:
| Q |
37 |
agttctacttatagtcaaactaatttttcattccttcatcgatttcaggatgacaatctgacgtgggtattttgtttaggttgatcaatcgatgaaactt |
136 |
Q |
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| T |
30994407 |
agttttacttatagtcaaactaatttttcattccttcatcgatttcaggatgacaatctgacgtgggtattttgtttaggttgatcaattgatgaaactt |
30994308 |
T |
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| Q |
137 |
cttactaatgcaaataacgaaactactttattagatattataatgtattagtttcacttataagccatacaaattgttggtagtctatgcaatttgtgta |
236 |
Q |
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| T |
30994307 |
cttactaattcaaataacgaaactactttattagatattataatgtattagtttcacttataagccatacaaattgttggtagtctatgcaatttgtgta |
30994208 |
T |
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| Q |
237 |
tatgcaattaacgtttggttattattaaagaacatttatcacttgtttccttgtcaaaaattgaatattttagt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30994207 |
catgcaattaacgtttggttattattaaagaacatttatcacttgtttccttgtcaaaaattgaatattttagt |
30994134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30994402 - 30994369
Alignment:
| Q |
1 |
tacttatagtcaaactattttttcattccttcat |
34 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
30994402 |
tacttatagtcaaactaatttttcattccttcat |
30994369 |
T |
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