View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_low_27 (Length: 321)
Name: NF1709_low_27
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 28331143 - 28330846
Alignment:
| Q |
16 |
acatgaagaagttatgtgatatttttgatggaattattgaaaaaagaattagttcaagatcttccaaagttgattatgtggtgcgcaatgatgtgttaga |
115 |
Q |
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| T |
28331143 |
acatgaagaagttatgtgatatttttgatggaattattgaaaaaagaattagttcaagatcttccaaagttgattatgtggtgtgcaatgatgtgttaga |
28331044 |
T |
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| Q |
116 |
ttcacttcttaacaacaaccatattggagaaaccactttggaattgacccgcaatgagatggtgcatctgtttctggttagttttgcttttcaaattatt |
215 |
Q |
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| T |
28331043 |
ttcacttcttaacaacaaccatgttggagaaaccactttggaattgacccgcaatgagatggtgcatctgtttctggttagttttgcttttcaaataatt |
28330944 |
T |
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| Q |
216 |
aaatttcataaactataagaaattcatttttatacattttcagtttnnnnnnnntgtagagtcaacgaattacaataatttttcaaatacttcatctc |
313 |
Q |
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| T |
28330943 |
aaatttcataaactataagaaattcatttttatacattttcagtttaaaaaaaatgtagagtcaacgaattacaataatttttgaaatacttcatctc |
28330846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 28296594 - 28296409
Alignment:
| Q |
24 |
aagttatgtgatatttttgatggaattattgaaaaaagaattagttcaagatcttccaaagttgattatgtggtgcgcaatgatgtgttagattcacttc |
123 |
Q |
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| T |
28296594 |
aagttgtgtgatatttttaatggaattattgaagaaagaatttgttcaagagcttccaatggtgattttgaggtgttcaatgatgtgttggattcacttc |
28296495 |
T |
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| Q |
124 |
ttaa---caacaaccatattggagaaaccactttggaattgacccgcaatgagatggtgcatctgtttctggttagttttgctttt |
206 |
Q |
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| T |
28296494 |
ttaatagcaacaatattattggagaaagcacttatgaattgagccgcaatgagatggtgcatctttttctggttagtgttgctttt |
28296409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 28320659 - 28320477
Alignment:
| Q |
18 |
atgaagaagttatgtgatatttttgatggaattattgaaaaaagaattagttcaagatcttccaaagttgattatgtggtgcgcaatgatgtgttagatt |
117 |
Q |
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| T |
28320659 |
atgaagaagttgtgtgagatttttgatggaattattgaagaaagaattcgttcaagatcctccaaagttg---ttgaggtttgcaatgatgtgttagatt |
28320563 |
T |
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| Q |
118 |
cacttcttaacaacaaccatattggagaaaccactttggaattgacccgcaatgagatggtgcatctgtttctggttagttttgctttt |
206 |
Q |
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| T |
28320562 |
cacttcttaatatta---atattggagaagcaacttcggaattgagccgcagtgagatggtgcatctgtttctggttagtgttgatttt |
28320477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 28304489 - 28304301
Alignment:
| Q |
16 |
acatgaagaagttatgtgatatttttgatggaattattgaaaaaagaattagttcaagatcttccaaagttgattatgtggtgcgcaatgatgtgttaga |
115 |
Q |
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| T |
28304489 |
acatgaagaagttatgtgatattttttatggaattattgaagaaagaatttgttcaagagcttccaaagctgatga---ggtttgcaatgatgggttaga |
28304393 |
T |
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| Q |
116 |
ttcacttcttaacaacaaccatattggagaaaccactttggaattgacccgcaatgagatggtgcatctgtttctggttagttttgcttttc |
207 |
Q |
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| T |
28304392 |
ttcacttctcaataacaacaatattggcgaaactacttcgcaattgagtcgcaataaaatgttatgtctgtttctggttagtgttggttttc |
28304301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 28310088 - 28309912
Alignment:
| Q |
18 |
atgaagaagttatgtgatatttttgatggaattattgaaaaaagaattagttcaagatcttccaaagttgattatgtggtgcgcaatgatgtgttagatt |
117 |
Q |
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| T |
28310088 |
atgaaaaagttgtgtgagatttttgatggaataattgaagaaagaattagttcaagagattccaattctgattctaaggtgtgcaatgatgtgttagatt |
28309989 |
T |
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| Q |
118 |
cacttcttaacaacaaccatattggagaaaccactttggaattgacccgcaatgagatggtgcatctgtttctggttagt |
197 |
Q |
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| T |
28309988 |
cacttcttaattaca---atattgaagaaaccactaataaattgagccgcaatgaaatggtgcatttatttcaggttagt |
28309912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 130
Target Start/End: Original strand, 28288689 - 28288719
Alignment:
| Q |
100 |
gcaatgatgtgttagattcacttcttaacaa |
130 |
Q |
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| T |
28288689 |
gcaatgatgtgttagattcacttcttaacaa |
28288719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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