View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_low_28 (Length: 305)
Name: NF1709_low_28
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 9473283 - 9473556
Alignment:
| Q |
19 |
caacataccaggattttcgacaatcttcggttcctctggagctgccaaccatgctgattatgtttgaaaaaattcgcggataaccttacgtatgaaaaac |
118 |
Q |
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| T |
9473283 |
caacataccaggattttcgacaatcttcggttcccctggagctgccaaccatgctgattatgtttgaaaaaagtcgtggatatccttacgtaggaaaaac |
9473382 |
T |
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| Q |
119 |
ttctaataatcttttactgaaaccatcatggccataacaatcaacatcgtaggcatatgtttcatttgtgtattcgaggtacaaaacgtcgttttctcag |
218 |
Q |
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| T |
9473383 |
ttctagtaatctttttctaaaaccatcatggccataacaatcaacttcataggcatatgtttcatttgcgtattctaggtacaaaatgccgttttctcag |
9473482 |
T |
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| Q |
219 |
tcctccatttccttgatgcgaagtatttttcagttcgtcaactgatcccgattcaacttccttcattttctcctttg |
295 |
Q |
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| T |
9473483 |
tcctccatttcctcgatacgtagtgttttttagttc---acttgatcctgattcaacttccttcattttctcctttg |
9473556 |
T |
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