View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_low_3 (Length: 707)
Name: NF1709_low_3
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 55 - 411
Target Start/End: Original strand, 34677814 - 34678170
Alignment:
| Q |
55 |
tagaagaaactatagcagtgttttctaagctacatgttcagctgcatttgctctccatgtttccagaagagaaaatactaacagtgaagttagcctttca |
154 |
Q |
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| T |
34677814 |
tagaagaaactatagcagagttttctaagctacatgttcagctgcatttgctctccatgtttccagaagagaaaatactaacagtgaagttagcctttca |
34677913 |
T |
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| Q |
155 |
ttttcatgaaaacagaacaacaaaaagctaagccgttattttgattattctagatggaactatacgtagtgttatgacttatgaatcttcaagttaaact |
254 |
Q |
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| T |
34677914 |
ttttcatgaaaacagaacaacaaaaagctaagccgttattttgattattctaggtggaactatacgtagtgttatgacttatgaatcttcaagttaaact |
34678013 |
T |
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| Q |
255 |
gtttaacttgtgtgcaattgaatcatcgatcacatcatgaaataatccttattttctacgatgatttgatgagtcttgtatatgaacattcatgtgatgt |
354 |
Q |
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| T |
34678014 |
gtttaacttgtgtgcaattgaatcatcgatcacatcatgaaataatccttattttctacgatgatttgatgactcttgtatatgaacattcatgtgatgt |
34678113 |
T |
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| Q |
355 |
actcttttgtttataatctgagagtgaaacagtagagagagctaaatgctcacagcg |
411 |
Q |
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| T |
34678114 |
actcttttgtttataatctgagagtgaaacagtagagagagctaaatgctcacagcg |
34678170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 485 - 691
Target Start/End: Original strand, 34678237 - 34678447
Alignment:
| Q |
485 |
ccacatacactgtttacacacataattaacaaatccagatcatcacagtatgttccatggtctatgatatcaatcaatatatgacatttccctnnnnnnn |
584 |
Q |
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| T |
34678237 |
ccacatacactgtttacacacataattaacaaatccagatcatcacagtatgttccatggtctattatatcaatcaatatatgacatttccctaaaaaaa |
34678336 |
T |
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| Q |
585 |
----tcaatatttgaaaataattttaaaatgtaaaagtagtgaccggtgatgttttcgataagagaatttgttatattactcgtcctcacgaatgagatg |
680 |
Q |
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| T |
34678337 |
aaaatcaatatttgaaaataattttaaaatgtaaaagtagtgactggtgatgtttctgataagagaagttgttatattactcgtcctcacgaatgagatg |
34678436 |
T |
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| Q |
681 |
ttggtccaatt |
691 |
Q |
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| T |
34678437 |
ttggtccaatt |
34678447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 34677749 - 34677780
Alignment:
| Q |
1 |
agagttagggttgttttatctatgattagaat |
32 |
Q |
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| T |
34677749 |
agagttagggttgttttatctatgattagaat |
34677780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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