View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_low_31 (Length: 298)
Name: NF1709_low_31
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 26735094 - 26734809
Alignment:
| Q |
1 |
tattgccacttatattgattctagtcaacaccggtaaagcaaagacctctgccggaatttctccgagaaactgattggcatcgagtaacagcgtctgcag |
100 |
Q |
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| T |
26735094 |
tattgccacttatgttgattctagtcaacaccggtaaagcaaagacctctgccggaatttctccgagaaactgattggcatcgagtaacagcgtctgcag |
26734995 |
T |
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| Q |
101 |
tgatcggagattcttcatggacgccggaatcctcccggtaaataaattgttagaaagagcgagattcccgagagaattgccagaaatctccgttggtagt |
200 |
Q |
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| T |
26734994 |
tgatcggagattcttcatggacgccggaatcctcccggtaaataaattgttagaaagagcgagattcccgagagaattgccagaaatctccgttggtagt |
26734895 |
T |
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| Q |
201 |
tggccgttaaaacggttatttccaagctctattatctgtacagaaggcaactgaaaaatccccggtgggaccgggccgtccaagta |
286 |
Q |
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| T |
26734894 |
tggccgttaaaacggttatttccaagctctattatctgtacagaaggcaactgaaaaatccccggtgggaccgggccgtccaagta |
26734809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 3 - 286
Target Start/End: Complemental strand, 26726778 - 26726495
Alignment:
| Q |
3 |
ttgccacttatattgattctagtcaacaccggtaaagcaaagacctctgccggaatttctccgagaaactgattggcatcgagtaacagcgtctgcagtg |
102 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| |||||||||| |
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| T |
26726778 |
ttgccacttatgttaattctagtcaacaccggtaaagcaaagacctctgtcggaatttctccgacaaactgattggcgtcgagtaacagagtctgcagtg |
26726679 |
T |
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| Q |
103 |
atcggagattcttcatggacgccggaatcctcccggtaaataaattgttagaaagagcgagattcccgagagaattgccagaaatctccgttggtagttg |
202 |
Q |
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| T |
26726678 |
atcggagattcttcatggacgccgaaatcctcccggtaaataaattgttagaaagagcgagaatcccgagagaattgccggaaatctccgatggtagttg |
26726579 |
T |
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| Q |
203 |
gccgttaaaacggttatttccaagctctattatctgtacagaaggcaactgaaaaatccccggtgggaccgggccgtccaagta |
286 |
Q |
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|||||||||||||||||||| |||||| || ||| ||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
26726578 |
gccgttaaaacggttatttctaagctccatcatcgttacagaaggcaactgaaaaattcccggtgggaccaggccgtccaagta |
26726495 |
T |
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