View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1709_low_32 (Length: 286)

Name: NF1709_low_32
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1709_low_32
NF1709_low_32
[»] chr8 (6 HSPs)
chr8 (114-270)||(392333-392490)
chr8 (114-234)||(7278077-7278197)
chr8 (114-174)||(7284629-7284689)
chr8 (41-89)||(7277948-7277996)
chr8 (41-116)||(3581559-3581634)
chr8 (54-90)||(7284513-7284549)
[»] chr6 (12 HSPs)
chr6 (114-259)||(21118454-21118599)
chr6 (114-270)||(14763853-14764010)
chr6 (114-268)||(14766430-14766585)
chr6 (114-227)||(21118736-21118849)
chr6 (13-103)||(14763716-14763808)
chr6 (114-230)||(32342064-32342180)
chr6 (10-107)||(14766269-14766368)
chr6 (10-107)||(21118289-21118388)
chr6 (120-191)||(20727499-20727570)
chr6 (10-103)||(20727615-20727707)
chr6 (188-270)||(20726709-20726789)
chr6 (10-107)||(32342243-32342341)
[»] chr1 (10 HSPs)
chr1 (114-269)||(52022066-52022221)
chr1 (114-270)||(6139756-6139913)
chr1 (10-103)||(6138358-6138453)
chr1 (114-270)||(6138150-6138292)
chr1 (10-107)||(3742511-3742609)
chr1 (114-202)||(5397354-5397436)
chr1 (14-107)||(52022287-52022381)
chr1 (56-104)||(6139978-6140026)
chr1 (121-201)||(43834965-43835045)
chr1 (154-202)||(2595366-2595414)
[»] chr5 (11 HSPs)
chr5 (114-270)||(35428347-35428507)
chr5 (114-270)||(35429930-35430087)
chr5 (114-270)||(41340978-41341135)
chr5 (114-270)||(7400492-7400648)
chr5 (10-107)||(41341197-41341296)
chr5 (154-270)||(13661657-13661774)
chr5 (37-107)||(35428215-35428285)
chr5 (114-268)||(7658916-7659070)
chr5 (10-107)||(35429769-35429868)
chr5 (36-201)||(18009205-18009373)
chr5 (47-107)||(30921521-30921581)
[»] chr3 (13 HSPs)
chr3 (120-270)||(38183136-38183287)
chr3 (114-222)||(17731091-17731199)
chr3 (114-222)||(19032322-19032430)
chr3 (10-107)||(17730928-17731028)
chr3 (10-107)||(19032159-19032259)
chr3 (10-92)||(43979392-43979476)
chr3 (125-223)||(1026785-1026883)
chr3 (10-105)||(40195693-40195790)
chr3 (122-230)||(21344714-21344826)
chr3 (10-93)||(3371585-3371670)
chr3 (155-227)||(3371390-3371462)
chr3 (42-94)||(3372473-3372525)
chr3 (12-107)||(1026957-1027054)
[»] chr7 (11 HSPs)
chr7 (114-258)||(5448886-5449030)
chr7 (126-258)||(5439888-5440020)
chr7 (114-270)||(15588679-15588833)
chr7 (10-107)||(5439715-5439814)
chr7 (10-107)||(5448725-5448824)
chr7 (120-270)||(15589819-15589968)
chr7 (114-190)||(5438883-5438959)
chr7 (10-107)||(5447730-5447829)
chr7 (114-190)||(5447893-5447969)
chr7 (10-103)||(15589649-15589744)
chr7 (55-107)||(5438767-5438819)
[»] chr4 (9 HSPs)
chr4 (152-270)||(45676680-45676798)
chr4 (114-270)||(31322517-31322671)
chr4 (114-202)||(14508735-14508823)
chr4 (114-234)||(31327178-31327298)
chr4 (122-188)||(10550049-10550115)
chr4 (41-94)||(10549927-10549980)
chr4 (54-107)||(14508886-14508939)
chr4 (114-198)||(41848369-41848453)
chr4 (10-92)||(31322787-31322873)
[»] chr2 (5 HSPs)
chr2 (114-230)||(4660133-4660248)
chr2 (114-220)||(20594608-20594714)
chr2 (153-259)||(34225076-34225182)
chr2 (152-202)||(33301075-33301125)
chr2 (41-93)||(31073577-31073629)


Alignment Details
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 114 - 270
Target Start/End: Original strand, 392333 - 392490
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 213  Q
    ||||| ||||||||||||||||||||||||| ||| | || || |||||||||||||||||||| ||||||||||||||||||||||||   ||||||||    
T  392333 ttaaactaagtcagatataagcttaaagtgctactaactgatgtatctaaaaacaaagaaactacgttcaatatatagccttggtcttccccttgcttca 392432  T
Q  214 ctaaactaagcgatgtgggacataatcaccaataactaatatttt-taacctccttct 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  392433 ctaaactaagcgatgtgggacataatcaccaataactaatattttctaacctccttct 392490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 114 - 234
Target Start/End: Original strand, 7278077 - 7278197
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 213  Q
    ||||| ||||||||||||||||||||||||| ||| | ||||||||||| |||||||||| ||| || |||||||||| | ||||| ||  |||||||||    
T  7278077 ttaaactaagtcagatataagcttaaagtgctactgactggtgcatctacaaacaaagaacctaggtccaatatatagtcatggtcctcccattgcttca 7278176  T
Q  214 ctaaactaagcgatgtgggac 234  Q
    | | |||||||||||| ||||    
T  7278177 ccacactaagcgatgtaggac 7278197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 7284629 - 7284689
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaa 174  Q
    ||||| ||||||||||||||| ||||||||  ||| |||||||| ||||||||||||||||    
T  7284629 ttaaactaagtcagatataagtttaaagtggtactaattggtgcgtctaaaaacaaagaaa 7284689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 7277948 - 7277996
Alignment:
Q  41 aaaaaccacgacggttgtctaaaccgacaaccagagtattattactatg 89  Q
    |||||||||||| ||||||||||||||||||||||  || |||||||||    
T  7277948 aaaaaccacgaccgttgtctaaaccgacaaccagaaaatgattactatg 7277996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 3581634 - 3581559
Alignment:
Q  41 aaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacacgtatactta 116  Q
    |||||||||||  || ||||||||||||||||| || ||| ||| |||||||| ||| ||||||||| || |||||    
T  3581634 aaaaaccacgatcgtcgtctaaaccgacaaccaaagaattgttattatgtgaagatttttacaacacatagactta 3581559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 7284513 - 7284549
Alignment:
Q  54 gttgtctaaaccgacaaccagagtattattactatgt 90  Q
    |||||||||||||||||||| || |||||||||||||    
T  7284513 gttgtctaaaccgacaaccaaagaattattactatgt 7284549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 114 - 259
Target Start/End: Original strand, 21118454 - 21118599
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 213  Q
    ||||| ||||||||||||||||||||||||| | | | |||||||||||||||||||||||||| ||||||||||||||||||| |||| | ||||||||    
T  21118454 ttaaactaagtcagatataagcttaaagtgctattgactggtgcatctaaaaacaaagaaactaggttcaatatatagccttggccttcctcttgcttca 21118553  T
Q  214 ctaaactaagcgatgtgggacataatcaccaataactaatattttt 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  21118554 ctaaactaagcgatgtgggacataatcaccaataactaatattttt 21118599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 114 - 270
Target Start/End: Original strand, 14763853 - 14764010
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 213  Q
    ||||| ||||||||||| ||||||||||||| ||| | |||| |||||||||||||||||||||  ||||||| ||||| |||||||||   ||||||||    
T  14763853 ttaaactaagtcagatacaagcttaaagtgctactgactggtacatctaaaaacaaagaaactagattcaataaatagctttggtcttccccttgcttca 14763952  T
Q  214 ctaaactaagcgatgtgggacataatcaccaataactaatatttt-taacctccttct 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14763953 ctaaactaagcgatgtgggacataatcaccaataactaatattttctaacctccttct 14764010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 114 - 268
Target Start/End: Original strand, 14766430 - 14766585
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 213  Q
    ||||| ||||||||||| ||||||||||||| | | | | ||||||||||||||||| |||||| |||||||||||||||||||||||||  ||||||||    
T  14766430 ttaaactaagtcagatacaagcttaaagtgctattgactagtgcatctaaaaacaaaaaaactaggttcaatatatagccttggtcttctccttgcttca 14766529  T
Q  214 ctaaactaagcgatgtgggacataatcaccaataactaatatttt-taacctcctt 268  Q
    |||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||    
T  14766530 ctaaactaagtgatgttggacataatcaccaataactaatattttctaacctcctt 14766585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 114 - 227
Target Start/End: Original strand, 21118736 - 21118849
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 213  Q
    ||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| ||||||||||||||||||| |||| | ||||||||    
T  21118736 ttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactaggttcaatatatagccttggccttcctcttgcttca 21118835  T
Q  214 ctaaactaagcgat 227  Q
    ||||||||||||||    
T  21118836 ctaaactaagcgat 21118849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 14763716 - 14763808
Alignment:
Q  13 aatataacatggaaactc--aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttaca 103  Q
    ||||||||||||||||||  |||||| || |||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||    
T  14763716 aatataacatggaaactccaaaaccgaagaaaaaaccacgactgttgtctaaaccgacaaccagagaattataactatgtgaaaatttttaca 14763808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 114 - 230
Target Start/End: Complemental strand, 32342180 - 32342064
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 213  Q
    ||||| ||||||||||||||||||||||||  ||| |  |||||||||||||||||||||  ||  |||||||||||||||||||||||   ||||||||    
T  32342180 ttaaactaagtcagatataagcttaaagtgttactgaccggtgcatctaaaaacaaagaacttatattcaatatatagccttggtcttccctttgcttca 32342081  T
Q  214 ctaaactaagcgatgtg 230  Q
    | ||||||| |||||||    
T  32342080 ccaaactaaccgatgtg 32342064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 14766269 - 14766368
Alignment:
Q  10 aagaatataacatggaaactc--aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 107  Q
    ||||||||||| |||||||||  ||| ||||| |||||||||||| ||||||||||||||||||||||| ||||| | | |||||||| | |||||||||    
T  14766269 aagaatataacgtggaaactccaaaatcggagaaaaaaccacgaccgttgtctaaaccgacaaccagagaattatcattttgtgaaaaattttacaacac 14766368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 21118289 - 21118388
Alignment:
Q  10 aagaatataacatggaaactc--aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 107  Q
    ||||||||||| |||||||||  ||| || || ||||||||| || |||||||||| ||||||||| || |||||||||||||||||||| |||||||||    
T  21118289 aagaatataacgtggaaactccaaaatcgaagaaaaaaccacaaccgttgtctaaatcgacaaccaaagaattattactatgtgaaaatttttacaacac 21118388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 20727570 - 20727499
Alignment:
Q  120 taagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatag 191  Q
    |||||||||||||||| |||||||| | | ||| ||||||||||||||||||||  || |||||||||||||    
T  20727570 taagtcagatataagcataaagtgctattgattagtgcatctaaaaacaaagaacataggttcaatatatag 20727499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 103
Target Start/End: Complemental strand, 20727707 - 20727615
Alignment:
Q  10 aagaatataacatggaaactc--aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttaca 103  Q
    ||||||||||  |||||||||  ||| | ||| |||||||||||   |||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  20727707 aagaatataatgtggaaactctaaaatcagagaaaaaaccacga---ttgtctaaaccgacaatcagagaattattactatgtgaaaatttttaca 20727615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 20726789 - 20726709
Alignment:
Q  188 atagccttggtcttcttattgcttcactaaactaagcgatgtgggacataatcaccaataactaata-tttttaacctccttct 270  Q
    |||| |||||||||| | ||||||||| ||||||||| |||||||||   |||  |||||||||||| ||||||||||||||||    
T  20726789 atagtcttggtcttcctcttgcttcaccaaactaagcaatgtgggac---atcttcaataactaatattttttaacctccttct 20726709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 32342341 - 32342243
Alignment:
Q  10 aagaatataacatggaaactc--aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 107  Q
    ||||||||||| |||||||||  |||  ||| |||||||||| |  |||||||||||| ||||||| || ||||||||||||||||  || |||||||||    
T  32342341 aagaatataacgtggaaactccaaaattgga-gaaaaaccactatcgttgtctaaaccaacaaccatagaattattactatgtgaatttttttacaacac 32342243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 114 - 269
Target Start/End: Complemental strand, 52022221 - 52022066
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 213  Q
    ||||| |||||||||||| |||||||||||| | | | |||||||||||||||||||||||||| ||||||||||||||||||||||||   || |||||    
T  52022221 ttaaactaagtcagatatgagcttaaagtgctaatgactggtgcatctaaaaacaaagaaactaggttcaatatatagccttggtcttccccttacttca 52022122  T
Q  214 ctaaactaagcgatgtgggacataatcaccaataactaatatttttaacctccttc 269  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  52022121 ctaaactaagcaatgtgggacataatcaccaataactaatatttttaacctccttc 52022066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 114 - 270
Target Start/End: Complemental strand, 6139913 - 6139756
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 213  Q
    ||||| ||||| ||||||||||||||||||  | | |  ||||||||||||||||||||||||| ||||||||||||||||||||||||   ||||||||    
T  6139913 ttaaactaagttagatataagcttaaagtgttattgaccggtgcatctaaaaacaaagaaactatgttcaatatatagccttggtcttccccttgcttca 6139814  T
Q  214 ctaaactaagcgatgtgggacataatcaccaataactaatatttt-taacctccttct 270  Q
    |||||||||||| ||||| ||||||||| ||||||||||| |||| ||||||||||||    
T  6139813 ctaaactaagcggtgtggaacataatcatcaataactaattttttctaacctccttct 6139756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 103
Target Start/End: Complemental strand, 6138453 - 6138358
Alignment:
Q  10 aagaatataacatggaaactc--aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttaca 103  Q
    ||||||||||| |||||||||  ||||  ||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6138453 aagaatataacgtggaaactccaaaactagagaaaaaaccacgaccgttgtctaaaccgacaaccagagaattattactatgtgaaaattgttaca 6138358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 270
Target Start/End: Complemental strand, 6138292 - 6138150
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 213  Q
    ||||| ||||||||||||||||||||||||| ||| | ||||||||| |||||||||||||||| ||||||||||||| ||||||                   
T  6138292 ttaaactaagtcagatataagcttaaagtgctactgactggtgcatcaaaaaacaaagaaactaggttcaatatatagtcttggt--------------- 6138208  T
Q  214 ctaaactaagcgatgtgggacataatcaccaataactaatatttt-taacctccttct 270  Q
    |||||| ||||||||||||| ||||||||||||||||||| |||| ||||||||||||    
T  6138207 ctaaacaaagcgatgtgggatataatcaccaataactaattttttctaacctccttct 6138150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 3742511 - 3742609
Alignment:
Q  10 aagaatataacatggaaactcaaac--cggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 107  Q
    ||||||||||| || |||||||||   | ||| |||||||||||| |||||||||||| ||||||| || ||||||||||||||||||||||||||||||    
T  3742511 aagaatataacgtgaaaactcaaaaatcagagaaaaaaccacgaccgttgtctaaacc-acaaccaaagaattattactatgtgaaaattgttacaacac 3742609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 5397436 - 5397354
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttc 202  Q
    ||||||||||| ||||||||||||||||||  ||      |||||||||||||||||||| ||| ||  ||||||||||||||||||||    
T  5397436 ttaaattaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttc 5397354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 52022381 - 52022287
Alignment:
Q  14 atataacatggaaactc-aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 107  Q
    ||||||| ||||||||| ||| | || ||||||||| |||  |||||||||||||||||||||  ||||||| |||||||||  | |||||||||    
T  52022381 atataacgtggaaactccaaaaccgaagaaaaaccatgaccattgtctaaaccgacaaccagaaaattattattatgtgaaatcttttacaacac 52022287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 6140026 - 6139978
Alignment:
Q  56 tgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaa 104  Q
    |||||||| ||||||| | || |||||||||||||||||||||||||||    
T  6140026 tgtctaaatcgacaactaaagaattattactatgtgaaaattgttacaa 6139978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 43835045 - 43834965
Alignment:
Q  121 aagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtctt 201  Q
    ||||||||| |||| ||||||||| ||| | || ||||||| ||||| |||||  || ||||||||||||||||| |||||    
T  43835045 aagtcagatgtaagtttaaagtgctactgactgatgcatcttaaaactaagaacttaggttcaatatatagccttagtctt 43834965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 2595366 - 2595414
Alignment:
Q  154 gtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttc 202  Q
    |||||||||||||||||||| ||||||  ||||||||| || |||||||    
T  2595366 gtgcatctaaaaacaaagaacctaagtctaatatatagtctaggtcttc 2595414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 114 - 270
Target Start/End: Original strand, 35428347 - 35428507
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaa---ctaagttcaatatatagccttggtcttcttattgct 210  Q
    ||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||||||||   ||| ||||||||||||||||||||||||  ||||||    
T  35428347 ttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaattactaggttcaatatatagccttggtcttcccattgct 35428446  T
Q  211 tcactaaactaagcgatgtgggacataatcaccaataactaatatttt-taacctccttct 270  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  35428447 tcactaaaataagcgatttgggacataatcaccaataactaatattttctaacctccttct 35428507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 114 - 270
Target Start/End: Original strand, 35429930 - 35430087
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 213  Q
    ||||| ||||||||||||||||||||||||| ||| | |||||| ||||||||||||||||||| ||||||||||||| ||||||||||   ||||||||    
T  35429930 ttaaactaagtcagatataagcttaaagtgctactgactggtgcttctaaaaacaaagaaactaggttcaatatatagtcttggtcttccccttgcttca 35430029  T
Q  214 ctaaactaagcgatgtgggacataatcaccaataactaatatttt-taacctccttct 270  Q
    ||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  35430030 ctaaaataagcgatgtcggacataatcaccaataactaatattttctaacctccttct 35430087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 114 - 270
Target Start/End: Complemental strand, 41341135 - 41340978
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 213  Q
    ||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| ||| |||||||| | |||||||||   ||||||||    
T  41341135 ttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactaggtttaatatataactttggtcttccccttgcttca 41341036  T
Q  214 ctaaactaagcgatgtgggacataatcaccaataactaatatttt-taacctccttct 270  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  41341035 ctaaactaagcgatgtgggacataaccaccaataactaatattttataacctccttct 41340978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 114 - 270
Target Start/End: Original strand, 7400492 - 7400648
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 213  Q
    ||||| ||||||||||||||||||||||||| ||| |  ||||||||||||||||||||| ||| ||||||||||||| ||||||||||   ||||| ||    
T  7400492 ttaaactaagtcagatataagcttaaagtgctactgaccggtgcatctaaaaacaaagaacctaggttcaatatatagtcttggtcttccccttgctcca 7400591  T
Q  214 ctaaactaagcgatgtgggacataatcaccaataactaatatttttaacctccttct 270  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  7400592 ctaaactaagcgatgtcggacataatcaccaataactaatatttttaacctctttct 7400648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 41341296 - 41341197
Alignment:
Q  10 aagaatataacatggaaactc--aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 107  Q
    |||||||||||||||||||||  ||||| |||||||||||| ||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  41341296 aagaatataacatggaaactccaaaaccagaggaaaaaccatgaccgttgtctaaaccgacaaccaaagaattattactatgtgaaaattgttacaacac 41341197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 154 - 270
Target Start/End: Complemental strand, 13661774 - 13661657
Alignment:
Q  154 gtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttcactaaactaagcgatgtgggacataatcaccaataactaat 253  Q
    |||||||| | ||||||||| | |||||||||||||| | |||||||||   |||||||||||||||||||||||||| |||||||||| ||||||||||    
T  13661774 gtgcatctgataacaaagaaccaaagttcaatatataacattggtcttccccttgcttcactaaactaagcgatgtggaacataatcactaataactaat 13661675  T
Q  254 at-ttttaacctccttct 270  Q
    || |||||||||||||||    
T  13661674 attttttaacctccttct 13661657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 35428215 - 35428285
Alignment:
Q  37 gaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 107  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35428215 gaggaaaaaccacgaccgttgtctaaaccgacaaccagagaattattactatgtgaaaattgttacaacac 35428285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 114 - 268
Target Start/End: Complemental strand, 7659070 - 7658916
Alignment:
Q  114 ttaaattaagtcagatata--agcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgctt 211  Q
    ||||| |||||||||||||  |||||||||||| ||| | |||| ||||| ||||||||||| |||| ||||||||||||| ||||||||| | |||||     
T  7659070 ttaaactaagtcagatatataagcttaaagtgctactaactggtacatctgaaaacaaagaacctaaattcaatatatagcattggtcttcgtcttgctc 7658971  T
Q  212 cactaaactaagcgatgtgggacataatcaccaataactaata-tttttaacctcctt 268  Q
    ||| | |||||||||||| ||||    || ||||||||||||| ||||||||||||||    
T  7658970 caccacactaagcgatgtaggac---ttctccaataactaatattttttaacctcctt 7658916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 35429769 - 35429868
Alignment:
Q  10 aagaatataacatggaaactc--aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 107  Q
    ||||||||||| |||||||||  ||||  |||||||||||||||| ||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  35429769 aagaatataacgtggaaactccaaaactagaggaaaaaccacgaccgttatctaaaccgacaaccagagaattattactatttgaaaattattacaacac 35429868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 201
Target Start/End: Complemental strand, 18009373 - 18009205
Alignment:
Q  36 ggaggaaaaaccacgacggttgtct--aaaccgacaaccagagtattattactatgtgaaa-attgttacaacacgtatacttaaattaagtcagatata 132  Q
    |||| |||||||||||  |||||||  |||||||||||||||  ||||||||||||||||| | | | ||||     ||| ||||| ||||||| |||||    
T  18009373 ggagaaaaaaccacgagcgttgtctctaaaccgacaaccagataattattactatgtgaaacactttcacaaagaaaatatttaaactaagtcaaatata 18009274  T
Q  133 agcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtctt 201  Q
    || ||||||||| ||| | |||||||| ||||||||| ||| ||| || ||||||||| ||||| ||||    
T  18009273 agtttaaagtgctactgactggtgcatttaaaaacaacgaatctaggtccaatatataaccttgatctt 18009205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 30921521 - 30921581
Alignment:
Q  47 cacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 107  Q
    |||||| ||||| |||||||||||| |||| ||||||||||||||||| || || ||||||    
T  30921521 cacgaccgttgtttaaaccgacaacaagagaattattactatgtgaaattttttccaacac 30921581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 120 - 270
Target Start/End: Original strand, 38183136 - 38183287
Alignment:
Q  120 taagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttcactaaac 219  Q
    ||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||  |||||||||||||||||||||||   ||||||||||||||    
T  38183136 taagtcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactagattcaatatatagccttggtcttcaccttgcttcactaaac 38183235  T
Q  220 taagcgatgtgggacataatcaccaataactaatatttt-taacctccttct 270  Q
    |||||||||||| | ||| |||||||||||||||||||| ||||||||||||    
T  38183236 taagcgatgtggaatatagtcaccaataactaatattttctaacctccttct 38183287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 17731091 - 17731199
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 213  Q
    ||||| ||||||||||||||||||||||||| ||| | |||||||||||| || |||||||||| ||||||||||||||||||| ||||   ||||||||    
T  17731091 ttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaacaataaagaaactaggttcaatatatagccttggccttccccttgcttca 17731190  T
Q  214 ctaaactaa 222  Q
    |||||||||    
T  17731191 ctaaactaa 17731199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 19032322 - 19032430
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 213  Q
    ||||| ||||||||||||||||||||||||| ||| | |||||||||||| || |||||||||| ||||||||||||||||||| ||||   ||||||||    
T  19032322 ttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaacaataaagaaactaggttcaatatatagccttggccttccccttgcttca 19032421  T
Q  214 ctaaactaa 222  Q
    |||||||||    
T  19032422 ctaaactaa 19032430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 17730928 - 17731028
Alignment:
Q  10 aagaatataacatggaaactc--aaaccggaggaaaa-accacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaaca 106  Q
    ||||||||||| |||||||||  |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||| ||||    
T  17730928 aagaatataacgtggaaactccaaaaccggaggaaaaaaccacgaccgttgtctaaaccgacaaccagagaattattactatgtgaaattttttagaaca 17731027  T
Q  107 c 107  Q
    |    
T  17731028 c 17731028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 19032159 - 19032259
Alignment:
Q  10 aagaatataacatggaaactc--aaaccggaggaaaa-accacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaaca 106  Q
    ||||||||||| |||||||||  |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||| ||||    
T  19032159 aagaatataacgtggaaactccaaaaccggaggaaaaaaccacgaccgttgtctaaaccgacaaccagagaattattactatgtgaaattttttagaaca 19032258  T
Q  107 c 107  Q
    |    
T  19032259 c 19032259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 43979476 - 43979392
Alignment:
Q  10 aagaatataacatggaaactc--aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtga 92  Q
    ||||||||||| |||||||||  |||| |||| |||||||||||| ||| ||||||||||||||||||| |||||||||||||||    
T  43979476 aagaatataacgtggaaactccaaaactggagaaaaaaccacgaccgttatctaaaccgacaaccagagaattattactatgtga 43979392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 1026883 - 1026785
Alignment:
Q  125 cagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttcactaaactaag 223  Q
    |||||||||||||| ||| | | | | |||||||||||||||||||||| ||| |||| ||||||||||||||| |||   ||||||||||||||||||    
T  1026883 cagatataagcttatagtactattgactggtgcatctaaaaacaaagaacctacgttcgatatatagccttggtattccccttgcttcactaaactaag 1026785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 40195790 - 40195693
Alignment:
Q  10 aagaatataacatggaaactc--aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaac 105  Q
    ||||||||||| |||||| ||  ||||| ||| |||||||||||  ||||||||||||||||||||||| ||||||||||||| ||| || |||||||    
T  40195790 aagaatataacgtggaaattccaaaaccagagaaaaaaccacgatcgttgtctaaaccgacaaccagagaattattactatgtaaaattttttacaac 40195693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 21344714 - 21344826
Alignment:
Q  122 agtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatat----atagccttggtcttcttattgcttcactaa 217  Q
    |||||||||||  |||||||||| ||| ||||||||||||||||||||| || ||| |||||||||    ||||| ||||||||| | ||| ||||| ||    
T  21344714 agtcagatatacacttaaagtgctactgattggtgcatctaaaaacaaataacctaggttcaatatatagatagcattggtcttcctcttgattcaccaa 21344813  T
Q  218 actaagcgatgtg 230  Q
    ||||||| |||||    
T  21344814 actaagcaatgtg 21344826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 3371670 - 3371585
Alignment:
Q  10 aagaatataacatggaaactc--aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaa 93  Q
    |||||||||||  ||||||||  ||||||||| ||||||||| |  ||||||| ||||||||||||||| ||||||||||||||||    
T  3371670 aagaatataacgaggaaactccaaaaccggagaaaaaaccactatcgttgtcttaaccgacaaccagagaattattactatgtgaa 3371585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 3371462 - 3371390
Alignment:
Q  155 tgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttcactaaactaagcgat 227  Q
    ||||||||||||||| ||| ||| ||| ||||||||||||||||||||   ||||||||| ||||||||||||    
T  3371462 tgcatctaaaaacaaggaacctaggtttaatatatagccttggtcttccctttgcttcaccaaactaagcgat 3371390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 3372525 - 3372473
Alignment:
Q  42 aaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaa 94  Q
    ||||||||||  ||||||||||||||||| ||||| |||||||||||||||||    
T  3372525 aaaaccacgatcgttgtctaaaccgacaatcagagaattattactatgtgaaa 3372473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 1027054 - 1026957
Alignment:
Q  12 gaatataacatggaaactc--aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 107  Q
    ||||||||| || ||||||  ||||| ||| |||||||||||| | |||||||||||||||||||||  |||||| || || |||| | |||||||||    
T  1027054 gaatataacgtgtaaactccaaaaccagagaaaaaaccacgaccgctgtctaaaccgacaaccagagagttattagtacgtaaaaaattttacaacac 1026957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 114 - 258
Target Start/End: Original strand, 5448886 - 5449030
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 213  Q
    ||||| ||||| ||||||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||||| ||||| |||   ||||||||    
T  5448886 ttaaactaagttagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactaggttcaatatatagcattggtattccccttgcttca 5448985  T
Q  214 ctaaactaagcgatgtgggacataatcaccaataactaatatttt 258  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||    
T  5448986 ctaaactaagcgatgtggaacataatcaccaatagctaatatttt 5449030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 5439888 - 5440020
Alignment:
Q  126 agatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttcactaaactaagcg 225  Q
    ||||||||||||||||||| ||| | ||||||||||||||||||| |||||| |||||||||||||| ||||| |||   ||||||||||||||||||||    
T  5439888 agatataagcttaaagtgctactgactggtgcatctaaaaacaaataaactaggttcaatatatagcattggtattccccttgcttcactaaactaagcg 5439987  T
Q  226 atgtgggacataatcaccaataactaatatttt 258  Q
    |||||| ||||||||||||||| ||||||||||    
T  5439988 atgtggaacataatcaccaatagctaatatttt 5440020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 114 - 270
Target Start/End: Original strand, 15588679 - 15588833
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 213  Q
    ||||| ||||||| |||||||||||| |||| ||| |  |||||||||||||||||||||  ||   |||||||||||||||||||||| | ||||||||    
T  15588679 ttaaactaagtcaaatataagcttaacgtgctactgacaggtgcatctaaaaacaaagaacgtaccatcaatatatagccttggtcttcctcttgcttca 15588778  T
Q  214 ctaaactaagcgatgtgggacataatcaccaataactaatatttt-taacctccttct 270  Q
    | |||||||| ||||||||||    || ||||||||||||||||| ||||||||||||    
T  15588779 ccaaactaagtgatgtgggac---ttctccaataactaatattttgtaacctccttct 15588833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 5439715 - 5439814
Alignment:
Q  10 aagaatataacatggaaactc--aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 107  Q
    ||||||||||| |||||||||  |||||| || |||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||| || |||||||||    
T  5439715 aagaatataacgtggaaactccaaaaccgtagaaaaaaccatgaccgttgtctaaaccgacaaccagagaattatcactatgtgaaattttttacaacac 5439814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 5448725 - 5448824
Alignment:
Q  10 aagaatataacatggaaactc--aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 107  Q
    ||||||||||  |||||||||  |||||| || |||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||| || |||||||||    
T  5448725 aagaatataatgtggaaactccaaaaccgtagaaaaaaccatgaccgttgtctaaaccgacaaccagagaattatcactatgtgaaattttttacaacac 5448824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 270
Target Start/End: Original strand, 15589819 - 15589968
Alignment:
Q  120 taagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttcactaaac 219  Q
    ||||| |||||||||||||| |||| ||| |   ||||||||||| |||||||| |||  |||||||||||||||||||||||   ||||||||| ||||    
T  15589819 taagtaagatataagcttaatgtgctactgacctgtgcatctaaatacaaagaacctagattcaatatatagccttggtcttccccttgcttcaccaaac 15589918  T
Q  220 taagcgatgtgggacataatcaccaataactaata-tttttaacctccttct 270  Q
    |||| || ||| ||| |  || ||||||||||||| ||||||||||||||||    
T  15589919 taagtgacgtgtgac-ttctc-ccaataactaatattttttaacctccttct 15589968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 5438883 - 5438959
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatata 190  Q
    ||||| ||||| | ||||||||||||||||| | | | |||||||||||||||||||||||||| ||||||||||||    
T  5438883 ttaaactaagttatatataagcttaaagtgctattgactggtgcatctaaaaacaaagaaactatgttcaatatata 5438959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 5447730 - 5447829
Alignment:
Q  10 aagaatataacatggaaactc--aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 107  Q
    ||||||||||  |||||||||  ||||||||| |||||| || ||  |||||||||||||||||||||| ||||| ||||||||||  || |||||||||    
T  5447730 aagaatataatgtggaaactctaaaaccggagaaaaaactactaccattgtctaaaccgacaaccagagaattatcactatgtgaatttttttacaacac 5447829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 5447893 - 5447969
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatata 190  Q
    ||||| ||||| | ||||||||||||||||| | | | |||||||||||| ||||||||||||| ||||||||||||    
T  5447893 ttaaactaagttatatataagcttaaagtgctattgactggtgcatctaagaacaaagaaactatgttcaatatata 5447969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 15589649 - 15589744
Alignment:
Q  10 aagaatataacatggaaactc--aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttaca 103  Q
    ||||||||||| |||||||||  |||||| || |||| ||| ||| ||| ||||||||||||||||||| ||| ||||||||||||| || |||||    
T  15589649 aagaatataacttggaaactccaaaaccgaagaaaaacccatgaccgttttctaaaccgacaaccagagaattgttactatgtgaaattttttaca 15589744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 5438767 - 5438819
Alignment:
Q  55 ttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 107  Q
    |||||||||||||||||||||| ||||| ||||| ||||  || |||||||||    
T  5438767 ttgtctaaaccgacaaccagagaattatcactatctgaatttttttacaacac 5438819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 152 - 270
Target Start/End: Original strand, 45676680 - 45676798
Alignment:
Q  152 tggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttcactaaactaagcgatgtgggacataatcaccaataacta 251  Q
    |||||||||||||||||||||| ||| ||||||||||||| ||| | |||    |||||||||||||||||||||||| ||||||||||||||||| |||    
T  45676680 tggtgcatctaaaaacaaagaacctaggttcaatatatagtcttagcctttcccttgcttcactaaactaagcgatgtaggacataatcaccaatagcta 45676779  T
Q  252 atatttttaacctccttct 270  Q
    |||||||||||||||||||    
T  45676780 atatttttaacctccttct 45676798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 270
Target Start/End: Complemental strand, 31322671 - 31322517
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 213  Q
    ||||| ||||||||||||||||||||||||||| | | |||||||||||||||||||||| ||| || ||||||||| ||||||||||| | || |||||    
T  31322671 ttaaactaagtcagatataagcttaaagtgccattgaatggtgcatctaaaaacaaagaacctaggtccaatatataaccttggtcttcctcttacttca 31322572  T
Q  214 ctaaactaagcgatgtgggacataatcaccaataactaatattttt-aacctccttct 270  Q
    | | ||||||  ||||| |||    || |||||| ||||||||||| |||||||||||    
T  31322571 ccacactaagtaatgtgagac---ttctccaatatctaatatttttaaacctccttct 31322517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 14508823 - 14508735
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttc 202  Q
    ||||| || |||||||||||||||||||||| ||| | |||| ||||||||||| ||||| ||| ||||||||||||||||||||||||    
T  14508823 ttaaactaggtcagatataagcttaaagtgctactgactggtacatctaaaaactaagaacctaggttcaatatatagccttggtcttc 14508735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 234
Target Start/End: Complemental strand, 31327298 - 31327178
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 213  Q
    |||||||||||||||||||| |||||||||| ||||| ||||| || |||||| | |||| ||| ||| |||||||||| ||||||||    ||||||||    
T  31327298 ttaaattaagtcagatataaacttaaagtgctacttactggtgtatataaaaatagagaacctaggttgaatatatagcattggtctttcctttgcttca 31327199  T
Q  214 ctaaactaagcgatgtgggac 234  Q
    | | ||||||| ||| |||||    
T  31327198 ccacactaagcaatgcgggac 31327178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 10550049 - 10550115
Alignment:
Q  122 agtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatata 188  Q
    |||||||||||| |||||||||| ||| | |||||||||||||||||||||| ||| ||||||||||    
T  10550049 agtcagatataaacttaaagtgctactgactggtgcatctaaaaacaaagaacctaggttcaatata 10550115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 10549927 - 10549980
Alignment:
Q  41 aaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaa 94  Q
    |||||||||||| |||||||| ||||||||| |||| |||||||||||||||||    
T  10549927 aaaaaccacgaccgttgtctataccgacaactagagaattattactatgtgaaa 10549980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 14508939 - 14508886
Alignment:
Q  54 gttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 107  Q
    |||||||||||||||||||| || ||||||||||||||||  || |||||||||    
T  14508939 gttgtctaaaccgacaaccaaagaattattactatgtgaatttttttacaacac 14508886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 41848369 - 41848453
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggt 198  Q
    ||||| ||| ||||||||||||| ||| ||| ||| | || ||||||||||||||||||| | ||||  |||||||||| |||||    
T  41848369 ttaaactaaatcagatataagctaaaaatgctactgactgatgcatctaaaaacaaagaaccaaagtcgaatatatagcattggt 41848453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 31322873 - 31322787
Alignment:
Q  10 aagaatataacatggaaactc--aaaccggaggaaaaaccacgacggttgtctaaac---cgacaaccagagtattattactatgtga 92  Q
    ||||||||||| |||||||||  ||| ||||| |||||||||||| |||||||||||   | |||||||||| |||||||| ||||||    
T  31322873 aagaatataacgtggaaactccaaaatcggag-aaaaaccacgactgttgtctaaacaaacaacaaccagagaattattaccatgtga 31322787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 114 - 230
Target Start/End: Original strand, 4660133 - 4660248
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 213  Q
    ||||| |||||||||||||| |||||||||| ||| |  |||||||| |||||||||||||||| |||||||||||||| |||||||||   ||||||||    
T  4660133 ttaaactaagtcagatataatcttaaagtgctactgaccggtgcatc-aaaaacaaagaaactaggttcaatatatagcattggtcttccccttgcttca 4660231  T
Q  214 ctaaactaagcgatgtg 230  Q
    | |||||||||||||||    
T  4660232 ccaaactaagcgatgtg 4660248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 20594714 - 20594608
Alignment:
Q  114 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 213  Q
    ||||| || |||||||||||||||| ||||  | | |  |||||||||||||| |||||| ||| ||||||||||||| ||||||||||   ||||||||    
T  20594714 ttaaactatgtcagatataagcttagagtgttattgaccggtgcatctaaaaataaagaacctaggttcaatatatagtcttggtcttccccttgcttca 20594615  T
Q  214 ctaaact 220  Q
    | |||||    
T  20594614 ccaaact 20594608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 259
Target Start/End: Original strand, 34225076 - 34225182
Alignment:
Q  153 ggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttcactaaactaagcgatgtgggacataatcaccaataactaa 252  Q
    |||||||||||||||||||||  || ||| |||||||||  ||| | |||   ||  || |||||| |||||||||| ||||||||||| ||||||||||    
T  34225076 ggtgcatctaaaaacaaagaatttaggtttaatatatagttttgattttccccttattttactaaattaagcgatgtaggacataatcatcaataactaa 34225175  T
Q  253 tattttt 259  Q
    |||||||    
T  34225176 tattttt 34225182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 202
Target Start/End: Original strand, 33301075 - 33301125
Alignment:
Q  152 tggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttc 202  Q
    |||| |||||||||||||||||  | |||||||||||||||||||||||||    
T  33301075 tggtacatctaaaaacaaagaacatgagttcaatatatagccttggtcttc 33301125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 31073577 - 31073629
Alignment:
Q  41 aaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaa 93  Q
    |||||| ||||  |||||||||||||||||||||||  |||||||||||||||    
T  31073577 aaaaacaacgatcgttgtctaaaccgacaaccagagagttattactatgtgaa 31073629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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