View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_low_35 (Length: 260)
Name: NF1709_low_35
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 5391702 - 5391476
Alignment:
| Q |
15 |
atcaaaaagacgttgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcga |
114 |
Q |
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| T |
5391702 |
atcaaaaagacgttgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcaa |
5391603 |
T |
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| Q |
115 |
agttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtatcccttcagacgggaatcaagcactacttt |
214 |
Q |
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| T |
5391602 |
agttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtgtcccttcaaacgggaatcaagcactacttt |
5391503 |
T |
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| Q |
215 |
ggatcctttgaaatagtcggtaagatc |
241 |
Q |
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| T |
5391502 |
ggatcctttgaaatagtcggtaagatc |
5391476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 5395511 - 5395287
Alignment:
| Q |
17 |
caaaaagacgttgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcgaag |
116 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5395511 |
caaaaagacgtcgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcctacagaggctcaaaactgcgaag |
5395412 |
T |
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| Q |
117 |
ttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtatcccttcagacgggaatcaagcactactttgg |
216 |
Q |
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| T |
5395411 |
ttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctcaatctttgccatgtgtcccttcaaacaggaactaagcactacctagg |
5395312 |
T |
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| Q |
217 |
atcctttgaaatagtcggtaagatc |
241 |
Q |
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|||||| |||| ||||||||||| |
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| T |
5395311 |
atccttcgaaacgatcggtaagatc |
5395287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 5401660 - 5401434
Alignment:
| Q |
15 |
atcaaaaagacgttgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcga |
114 |
Q |
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||||||| || |||||||||||||| || || ||||| || ||||| ||||| |||||||||||||||||||||| ||||| ||||||||||| || || |
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| T |
5401660 |
atcaaaacgatgttgaattgaagctatcccctttaacagacgtgacccatatattctatgtctcgtggaccagcagacccacggaggctcaaaattgtga |
5401561 |
T |
|
| Q |
115 |
agttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtatcccttcagacgggaatcaagcactacttt |
214 |
Q |
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| T |
5401560 |
ggtgaatggtgccatgttgaggaacgtccttcaagccctaatcccaaatgctccaaatctttcccatgtgtctcttcagactggtgccaagcactatgta |
5401461 |
T |
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| Q |
215 |
ggatcctttgaaatagtcggtaagatc |
241 |
Q |
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||| |||| ||||| ||||||||||| |
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| T |
5401460 |
ggacccttcgaaatcatcggtaagatc |
5401434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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