View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_low_38 (Length: 258)
Name: NF1709_low_38
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 22 - 239
Target Start/End: Original strand, 28252580 - 28252797
Alignment:
| Q |
22 |
ttaggtgagttctcacaacctaacaacccaatacctctaaagtctgttagattgaacaaaattactagattaaattcaatagctatggctagtagtcaat |
121 |
Q |
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| T |
28252580 |
ttaggtgagttctcacaacctaacaacccaatacctctaaagtctgttagattgaacaaaattactagattaaattcaatagctatgactagtagtcaat |
28252679 |
T |
|
| Q |
122 |
tgagatttaagttcatttcatatttgatcaagatacaaaacgcattaagcacaagtaattctaaataaatactagaattgtaaagtttatacaaccacat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28252680 |
tgagatttaagttcatttcatatttgatcaagatacaaaacgcattaagcacaagtaattctaaataaatactagaattgtaaagtttatacaaccacat |
28252779 |
T |
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| Q |
222 |
agttcaaacagcttgata |
239 |
Q |
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|||||||| ||||||||| |
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| T |
28252780 |
agttcaaatagcttgata |
28252797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 67 - 204
Target Start/End: Complemental strand, 3297098 - 3296958
Alignment:
| Q |
67 |
gttagattgaacaaaattactagattaaattcaatagctatggctagtagtcaattgagatttaagttcatttcatatttgatcaagatacaaaacgcat |
166 |
Q |
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|||| |||||||| ||||||||| | |||||||| || || | |||||||||||||||||||||||| ||||||||| ||||||||| ||||||| |||| |
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| T |
3297098 |
gttaaattgaacataattactaggtcaaattcaacagttacgactagtagtcaattgagatttaagtccatttcataattgatcaagttacaaaaagcat |
3296999 |
T |
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| Q |
167 |
---taagcacaagtaattctaaataaatactagaattgtaa |
204 |
Q |
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| T |
3296998 |
taataagcacaagtaattctgaataacaactagaattgtaa |
3296958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 200
Target Start/End: Complemental strand, 21599397 - 21599271
Alignment:
| Q |
74 |
tgaacaaaattactagattaaattcaatagctatggctagtagtcaattgagatttaagttcatttcatatttgatcaagatacaaaacgcattaagcac |
173 |
Q |
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|||||| ||||||||||| |||||||| | ||||| |||| || |||||||||||||| | |||||||||||||||||||||||||| ||||||| ||| |
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| T |
21599397 |
tgaacataattactagatcaaattcaacaactatgcttagttgttaattgagatttaagctaatttcatatttgatcaagatacaaaaagcattaaacac |
21599298 |
T |
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| Q |
174 |
aagtaattctaaataaatactagaatt |
200 |
Q |
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|||||||| | ||||| ||||||||| |
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| T |
21599297 |
aagtaattttgaataacaactagaatt |
21599271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 200
Target Start/End: Complemental strand, 4288155 - 4288028
Alignment:
| Q |
74 |
tgaacaaaattactagattaaattcaatagctatggctagtagtcaattgagatttaagttcatttcatatttgatcaagatac-aaaacgcattaagca |
172 |
Q |
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| T |
4288155 |
tgaacaaaaatactaaaataaattcaacatgcagggctaatagtcaattgagatttaaattcaatttatatttaataaagatacaaaaaaacattaagca |
4288056 |
T |
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| Q |
173 |
caagtaattctaaataaatactagaatt |
200 |
Q |
| |
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||| |||| |||||||| ||||||||| |
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| T |
4288055 |
taagaaattttaaataaaaactagaatt |
4288028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 186
Target Start/End: Original strand, 26157001 - 26157120
Alignment:
| Q |
67 |
gttagattgaacaaaattactagattaaattcaatagctatggctagtagtcaattgagatttaagttcatttcatatttgatcaagatacaaaacgcat |
166 |
Q |
| |
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||||| || |||||||||| ||||| ||||||| | ||||| ||||||||||||||| |||||| ||||||| |||| ||||||||||| |||| |||| |
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| T |
26157001 |
gttaggttaaacaaaattattagatcgaattcaacaactatgactagtagtcaattgatatttaaattcatttaatatgtgatcaagatataaaaagcat |
26157100 |
T |
|
| Q |
167 |
taagcacaagtaattctaaa |
186 |
Q |
| |
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|| | ||| |||||||||| |
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| T |
26157101 |
tacacgcaaataattctaaa |
26157120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 177
Target Start/End: Original strand, 1535093 - 1535203
Alignment:
| Q |
66 |
tgttagattgaacaaaattactagattaaattcaatagctatggctagtagtcaattgagatttaagttcatttcatatttgatcaagatacaaaacgca |
165 |
Q |
| |
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|||||||||||| | | ||||||| | |||||||| | ||||| |||| | ||||||| ||||||||||||| | |||||| ||||||||||| || ||| |
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| T |
1535093 |
tgttagattgaatagatttactaggtcaaattcaacaactatgactagaaatcaattgggatttaagttcatat-atattttatcaagatacacaaagca |
1535191 |
T |
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| Q |
166 |
ttaagcacaagt |
177 |
Q |
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|||||| ||||| |
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| T |
1535192 |
ttaagctcaagt |
1535203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 4753742 - 4753639
Alignment:
| Q |
67 |
gttagattgaacaaaattactagattaaattcaatagctatggctagtagtcaattgagatttaagttcatttcatatttgatcaagatacaaaacgcat |
166 |
Q |
| |
|
||||| ||||| || |||| ||||| |||||||| | || ||||||| ||| |||| ||||||| ||| ||||||| ||||||||||| |||| |||| |
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| T |
4753742 |
gttaggttgaataatattattagatcaaattcaacacttaatgctagtaatcacttgatatttaagatcaattcatatgtgatcaagatataaaaggcat |
4753643 |
T |
|
| Q |
167 |
taag |
170 |
Q |
| |
|
|||| |
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| T |
4753642 |
taag |
4753639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 18547334 - 18547264
Alignment:
| Q |
131 |
agttcatttcatatttgatcaagatacaaaacgcattaagcacaagtaattctaaataaatactagaattg |
201 |
Q |
| |
|
|||| |||| |||| |||||||||||||||| ||||||| ||||||| || | |||||||||||||||| |
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| T |
18547334 |
agtttattttatatgtgatcaagatacaaaaagcattaaacacaagttatattgtataaatactagaattg |
18547264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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