View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_low_40 (Length: 250)
Name: NF1709_low_40
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_40 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 29013104 - 29012865
Alignment:
| Q |
9 |
aagcaaaggcaaaacaatgcaggtttcagcggcaagaagaaggaactgtcgtggcattgcgtcgaaggttgtggtgcttgttgtaagcttcaaaaaggtc |
108 |
Q |
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| T |
29013104 |
aagcaaaggcaaaacaatgcaggtttcagcggcaagaagaaggaactgtcgtggcattgcgtggaaggttgtggtgcttgttgtaagcttcaaaaaggtc |
29013005 |
T |
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| Q |
109 |
cttcttatccatctcctgaagaaattttcaccgaccctttagatgttgaggtccattttcctatgttttataagttttaatttgtagtaaattgacctat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29013004 |
cttcttatccatctcctgaagaaattttcaccgaccctttagatgttgaggtccattttcctatgttttataagttttaatttgtagtaaattgacctat |
29012905 |
T |
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| Q |
209 |
gtacattctatttagtgtgtattattataatgaattaatg |
248 |
Q |
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| T |
29012904 |
gtacattctatttagtgtttattattataatgaattaatg |
29012865 |
T |
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Back To:
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Target: scaffold0016 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 12 - 177
Target Start/End: Original strand, 31793 - 31958
Alignment:
| Q |
12 |
caaaggcaaaacaatgcaggtttcagcggcaagaagaaggaactgtcgtggcattgcgtcgaaggttgtggtgcttgttgtaagcttcaaaaaggtcctt |
111 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
31793 |
caaaggcaaaataatgcaggtttcagcggcgagaagaaggaattgtcgtggcattgcgtggaaggttgtgctgcttgttgtaagcttcaaaaaggtcctt |
31892 |
T |
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| Q |
112 |
cttatccatctcctgaagaaattttcaccgaccctttagatgttgaggtccattttcctatgtttt |
177 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31893 |
cttatccatctcctgaagaaattttcaccgacccttcagatgttgaggtccattttcctatgtttt |
31958 |
T |
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