View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1709_low_41 (Length: 250)
Name: NF1709_low_41
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_41 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 30994767 - 30994981
Alignment:
| Q |
1 |
agtcaaagaaataaagagggaggttcaaacattgactttagaatttcattcagctcaaataaactcttcgaatactcccgattattgtctttttagggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30994767 |
agtcaaagaaataaagagggaggttcaaacattgactttagaatttcattcagctcaaataaactcttcgaatactcccgattattgtctttttagggtt |
30994866 |
T |
|
| Q |
101 |
cacctatttttagaaactctcattcgccgattttcattcttgacttctcacaaggtatgtatgtatattcattacacttttttcctttgaatttgttttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30994867 |
cacctatttttagaaactctcattcgccgattttcattcttgacttctcacaaggtatgtatgtatattcattacactttttttctttgaatttgttttg |
30994966 |
T |
|
| Q |
201 |
cggtgattaacttgc |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
30994967 |
cggtgattaacttgc |
30994981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University