View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_low_42 (Length: 249)
Name: NF1709_low_42
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 24356122 - 24356358
Alignment:
| Q |
1 |
tacacctttagcagccaaccactcaacaatagccttgttggcaattcgcgctttcttcggactagctgaaggagtagctcttccatccatgagcactctc |
100 |
Q |
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| T |
24356122 |
tacacctttagcagccaaccactcaacaatagccttgttggcaattcgcgctttcttcggactagctgaaggagtagctcttccatccatgagcactctc |
24356221 |
T |
|
| Q |
101 |
ttatcaaggtgatacgtctaaaatctccttagacatatatatatttaaggtttaattattcatttagtcttgcaaatatggctaactttgatgttagttc |
200 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24356222 |
ttatcaaggtgatacctctaaaatctccttagac--atatatatttaaggtttaattattcatttagtcttgcaaatatggctaactttgatgttagttc |
24356319 |
T |
|
| Q |
201 |
ttgtaaataaatagttaaaccgatacttagctatctctg |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
24356320 |
ttgtaaataaatagttaaaccgatacttagctatctctg |
24356358 |
T |
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