View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_low_48 (Length: 247)
Name: NF1709_low_48
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_48 |
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| [»] chr5 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 38789107 - 38788870
Alignment:
| Q |
10 |
aagaacaagagtcttgatataacaatcatggtggtgatatacatgagttatgcctcgaagatccagtctccccaaaccaattcttgatgaaccctaatct |
109 |
Q |
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|||||||||| |||||||||||||||| |||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38789107 |
aagaacaagaatcttgatataacaatcctggtggtgtgatatatgagttatgcctcaaagatccagtctccccaaaccaattcttgatgaaccctaatct |
38789008 |
T |
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| Q |
110 |
gatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacactatagtagtaactcttttccattaagatcttctcgctagcgatttcccctaa |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38789007 |
gatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacactatagtagtaactcttttccattaagatcttctcgctagcgatttcccctac |
38788908 |
T |
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| Q |
210 |
ccaccaaccatcgttatcaaatacatcaactttctgat |
247 |
Q |
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||||||||||||||||||||| |||||||||||||||| |
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| T |
38788907 |
ccaccaaccatcgttatcaaacacatcaactttctgat |
38788870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 38782935 - 38782698
Alignment:
| Q |
10 |
aagaacaagagtcttgatataacaatcatggtggtgatatacatgagttatgcctcgaagatccagtctccccaaaccaattcttgatgaaccctaatct |
109 |
Q |
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|||||||||| |||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38782935 |
aagaacaagaatcttgatataacaatcgtggtggtgtgatatatgagttatgcctcgaagatccagtctccccaaaccaattcttgatgaaccctaatct |
38782836 |
T |
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| Q |
110 |
gatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacactatagtagtaactcttttccattaagatcttctcgctagcgatttcccctaa |
209 |
Q |
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| T |
38782835 |
gatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacactatagtagcaactcttttccatcaagatcttctcgctagcgattttacctac |
38782736 |
T |
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| Q |
210 |
ccaccaaccatcgttatcaaatacatcaactttctgat |
247 |
Q |
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| T |
38782735 |
ccaccaaccatcgttatcaaatacatcaactttttgat |
38782698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 47 - 247
Target Start/End: Original strand, 38743337 - 38743537
Alignment:
| Q |
47 |
tatacatgagttatgcctcgaagatccagtctccccaaaccaattcttgatgaaccctaatctgatcacaagggtagtaaatagtttgatggcaatagtc |
146 |
Q |
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| T |
38743337 |
tatacataagttatgcctcgaagatccagtctccccaaaccaattcttgatgaaccctaatctgatcacaagggtagtaaatagtttgatggcaatagtc |
38743436 |
T |
|
| Q |
147 |
aaaatacacactatagtagtaactcttttccattaagatcttctcgctagcgatttcccctaaccaccaaccatcgttatcaaatacatcaactttctga |
246 |
Q |
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| T |
38743437 |
aaaatacacactatagtagtaactcttttccatcaagatcttctcgctagcaattttccctacccaccaaccatcgttatcaaacacgtcaactttctga |
38743536 |
T |
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| Q |
247 |
t |
247 |
Q |
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| T |
38743537 |
t |
38743537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 30962718 - 30962953
Alignment:
| Q |
10 |
aagaacaagagtcttgatataacaatcatggtggtgatatacatgagttatgcctcgaagatccagtctccccaaaccaattcttgatgaaccctaatct |
109 |
Q |
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|||||||| ||||||||| ||||||||||| |||||||||| |||| ||||||||| |||||||| |||||||||| ||| | ||||||||||||||| | |
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| T |
30962718 |
aagaacaatagtcttgat-taacaatcatgatggtgatatatatgaattatgcctccaagatccactctccccaaaacaacttttgatgaaccctaattt |
30962816 |
T |
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| Q |
110 |
gatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacactatagtagtaactcttttccattaagatcttctcgctagcgatttcccctaa |
209 |
Q |
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| T |
30962817 |
gatcaca-gggtagtaaatagtttgatgggtgtagtcaaaatacacactatagtagtaattgttttccatgaggatcttctcgctagcaattttccctac |
30962915 |
T |
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| Q |
210 |
ccaccaaccatcgttatcaaatacatcaactttctgat |
247 |
Q |
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|||||||||||| |||| ||| ||||||||||| |||| |
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| T |
30962916 |
ccaccaaccatctttataaaaaacatcaactttttgat |
30962953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 5963481 - 5963545
Alignment:
| Q |
183 |
gatcttctcgctagcgatttcccctaaccaccaaccatcgttatcaaatacatcaactttctgat |
247 |
Q |
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||||||||| |||| ||||| ||||||||||||||||||||| ||||| |||||||||| |||| |
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| T |
5963481 |
gatcttctcactagtgatttgccctaaccaccaaccatcgttgtcaaaagcatcaactttttgat |
5963545 |
T |
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