View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_low_5 (Length: 606)
Name: NF1709_low_5
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 5 - 589
Target Start/End: Complemental strand, 37528747 - 37528172
Alignment:
| Q |
5 |
ggtagattattctaatacgttttggattgaagtgtctttatctttttctagtgtctcttactgcgatgtccttgttaggtggtttaagcatgcatccatt |
104 |
Q |
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| T |
37528747 |
ggtagattcttctaatacgttttggattgaagtgtctttatctttttctagtgtctcttactgcgatgtccttgttaggtggtttaagcatgcatccatt |
37528648 |
T |
|
| Q |
105 |
ggcttagcaatagttggttcgtgtctaatagctaaccgtactattcaatacatcttgctaaggtggcgacaatgtaaactgctaaaaaggtacacgatgc |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37528647 |
ggcttagcaatagttggttcgtgtctaatagctaaccgtactattcaatacatcttgttaaggtggcgacaatgtaaactgctaaaaaggtacacaatgc |
37528548 |
T |
|
| Q |
205 |
tgaacattcttcttattaatggttaaaaaccacatactatattgaaagacgttgaaccggaaaaagttatacaatgttgttctcttaggaatctcacccg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37528547 |
tgaacattcttcttattaatggttaaaaaccacatactat---------cgttgaaccagaaaaagttatacaatgttgttctcttaggaatctcacccg |
37528457 |
T |
|
| Q |
305 |
agtttaagtaaaagtatttgcattacgattctacaccagtcaacattccaataccacctcttttgcttattctaaacaaagtacttgataattttatgca |
404 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37528456 |
agtttaagtgaaagtatttgcattacgattctacaccagtcaacattccaataccacctcttttgcttattctaaacaaagtacttcataattttatgca |
37528357 |
T |
|
| Q |
405 |
gggtactagatgcagctgctaagaagtcaaaacaaggtattgaaggtaaattgctaaaagtctattaactttgtaatgactgtttcgataggtgtaagaa |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37528356 |
gggtactagatgcagctgctaagaagtcaaaacaaggtattgaaggtaaattgctaaaagtctattaactttgtaatgactgtttcgataggtgtaagaa |
37528257 |
T |
|
| Q |
505 |
tttgtgaccatttctcaggtgaaattgatgacaacttcttagcaggtggtcaaggagacttgccagatttgtgtgtgatatgcct |
589 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37528256 |
tttgtgaccatttctcaggtgaaattgatgacaacttcttagcaggtggtcaaggagacttgccagatttgtgtgtgatatgcct |
37528172 |
T |
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