View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_low_51 (Length: 238)
Name: NF1709_low_51
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 31990829 - 31990607
Alignment:
| Q |
1 |
aactaatgcgataactaaatgaaaaaggatcaacatttattatttatacaacaaaggacatgactcatctcactataaagtggtcacacactnnnnnnnn |
100 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31990829 |
aactcatgcgataactaaatgaaaaaggattaacatttattatttatactacaaaggacatgactcatctcactataaagtggtcacacactaaaaaaaa |
31990730 |
T |
|
| Q |
101 |
--taagaaacattatatacatgcaaaagacaaataatctaaacttccagccaaacattattaacatttgttattgttaaaagatcgagccaccg---tat |
195 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
31990729 |
aataagaaacattatatacatgcaaaagacaa-taatctaaacttccagccaaacattattaacatttgttattgttaaatgatcgagccaccgtattat |
31990631 |
T |
|
| Q |
196 |
ttttatcgacccttcaaatatagt |
219 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
31990630 |
ttttatcgacccttcaaatatagt |
31990607 |
T |
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