View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_low_54 (Length: 236)
Name: NF1709_low_54
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 41249129 - 41248913
Alignment:
| Q |
1 |
atataggtagttaggaatttgatgtgttactattgacatgaccggtggtatacaatattattcaatataagctttggtttaagtctatgtttgatgcttt |
100 |
Q |
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| T |
41249129 |
atataggtagctagaaatttgatgtgttactattgacatgaccggttgtatacaatattattcaatataagctttggtttaagtctatg----atgcttt |
41249034 |
T |
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| Q |
101 |
tttcgacttgaactccaaaaatgattatttgatttagcaagtgtcaaacctcgctttgttatccaagagatctaatttaagccatgtatagatgataatg |
200 |
Q |
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| T |
41249033 |
ttttgacttgaactccaaaaatgattatttgatttagcaagtgtcaaacctcgctttgttatccaagagatctaatttaagccatgtatagatgataatg |
41248934 |
T |
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| Q |
201 |
tgtagacatagggttaaatat |
221 |
Q |
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| T |
41248933 |
tgtagacatagggttaaatat |
41248913 |
T |
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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 44984918 - 44985002
Alignment:
| Q |
57 |
attattcaatataagctttggtttaagtctatgtttgatgcttttttcgacttgaactccaaaaatgattatttgatttagcaag |
141 |
Q |
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| T |
44984918 |
attattcaatataagctttggtttaattctatgtttaatactttttccgacgtgcaacccgaaaatgattatttgacttagcaag |
44985002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 48822943 - 48822871
Alignment:
| Q |
64 |
aatataagctttggtttaagtctatgtttgatgcttttttcgacttgaactccaaaaatgattatttgattta |
136 |
Q |
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| T |
48822943 |
aatataagctttggtttaattctataattaatgctttctccgacgtgcaatccgaaaatgattatttgattta |
48822871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 1819157 - 1819248
Alignment:
| Q |
58 |
ttattcaatataagctttggtttaagtctatgtttgatgcttttttcgacttgaactccaaaaatgattatttgatttagcaagtgtcaaac |
149 |
Q |
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| T |
1819157 |
ttattcaatgtaatctttggtttagctatatacttaatgctttttccgacgtgcaatccaaaaatgattatttgatttagaaagtgtgaaac |
1819248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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