View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_low_55 (Length: 233)
Name: NF1709_low_55
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_55 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 25923265 - 25923484
Alignment:
| Q |
14 |
taaacattcttcagtttattttccatcactcaagaggctgagacttggtgaactcattgtagattcagaagtttcctttctctctggctgccccatgctg |
113 |
Q |
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| T |
25923265 |
taaacattcttcagtttattttccatcactcaagaggctgagacttggtgaactcattgtagattcagaagtttcctttctctctggctgccccatgctg |
25923364 |
T |
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| Q |
114 |
gaaactctagagattggcttttacttaaataacatacctttgacccaagttaccaggttgaaatccaccaatcacaatttcacttggagttactttgagt |
213 |
Q |
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| T |
25923365 |
gaaactctagagattggcttttacttaaataacatacctttgactgaagttacgaggttgaaatccaccaatcacaatttcacttggagttactttgagt |
25923464 |
T |
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| Q |
214 |
tttatgtaaattccagattt |
233 |
Q |
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|||||||||||||||||||| |
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| T |
25923465 |
tttatgtaaattccagattt |
25923484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 24525010 - 24525055
Alignment:
| Q |
170 |
gttgaaatccaccaatcacaatttcacttggagttactttgagttt |
215 |
Q |
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| T |
24525010 |
gttgaaatccatcaatgacaatttcacttggacttactttgagttt |
24525055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 30078189 - 30078233
Alignment:
| Q |
171 |
ttgaaatccaccaatcacaatttcacttggagttactttgagttt |
215 |
Q |
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||||||||||||||||||||||||||||||| | ||||| ||||| |
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| T |
30078189 |
ttgaaatccaccaatcacaatttcacttggactcactttaagttt |
30078233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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