View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_low_60 (Length: 224)
Name: NF1709_low_60
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 30507187 - 30506979
Alignment:
| Q |
1 |
aaaacagtataagaaattaaagttttatttttctctctagggaagggaaatacaatggtagtaaaaagaaagggggaaattaatagaggcataccagtca |
100 |
Q |
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| T |
30507187 |
aaaacagcataagaaattaaagttttatttctctctctagggaagggaaataaaatggtagtaaaaagaaagggggaaattaatagaggcataccagtca |
30507088 |
T |
|
| Q |
101 |
atgagaaaggaactgtcattcaaagtttcaacctatagtgtgaagaaaacagaatcatgttctttaccccaatttttacctttcatactttttcctgtcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30507087 |
atgagaaaggaactgtcattcaaagtttcaacctatagtgtgaagaaaacagaatcatgttctttaccccaatttttacctttcatactttttcctgtcg |
30506988 |
T |
|
| Q |
201 |
ccatctcaa |
209 |
Q |
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||||||||| |
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| T |
30506987 |
ccatctcaa |
30506979 |
T |
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