View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_low_64 (Length: 218)
Name: NF1709_low_64
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 34764029 - 34763827
Alignment:
| Q |
1 |
ccatcttccaaatccaccaagccctaaaccacgtcttccattcataggtcatcttcatcttttggataacccacttcttcaccacactcttatcaagtta |
100 |
Q |
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| T |
34764029 |
ccatcttccaaatccaccaagccctaaaccacgtcttcctttcattggtcatcttcatcttttggataacccacttcttcaccacactcttatcaagtta |
34763930 |
T |
|
| Q |
101 |
ggaaagcgttatggacctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttttccttcaaacccatg |
200 |
Q |
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| T |
34763929 |
ggaaagcgttatggacctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttttccttcaaacccatg |
34763830 |
T |
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| Q |
201 |
aag |
203 |
Q |
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||| |
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| T |
34763829 |
aag |
34763827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 5 - 203
Target Start/End: Original strand, 34780087 - 34780285
Alignment:
| Q |
5 |
cttccaaatccaccaagccctaaaccacgtcttccattcataggtcatcttcatcttttggataacccacttcttcaccacactcttatcaagttaggaa |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780087 |
cttccaaatccaccaagccctaaaccacgtcttccattcataggtcatcttcaccttttggataacccacttcttcaccacactcttatcaagttaggaa |
34780186 |
T |
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| Q |
105 |
agcgttatggacctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttttccttcaaacccatgaag |
203 |
Q |
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| T |
34780187 |
agcgttatggccctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttttccttcaaacccatgaag |
34780285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 5 - 203
Target Start/End: Complemental strand, 34756049 - 34755851
Alignment:
| Q |
5 |
cttccaaatccaccaagccctaaaccacgtcttccattcataggtcatcttcatcttttggataacccacttcttcaccacactcttatcaagttaggaa |
104 |
Q |
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||||| ||||| || || || ||||| |||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34756049 |
cttcccaatcctccgagtcccaaacctcgtcttccatccattggtcatcttcaccttttggataaccctcttcttcaccacactcttatcaagttaggag |
34755950 |
T |
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| Q |
105 |
agcgttatggacctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttttccttcaaacccatgaag |
203 |
Q |
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| T |
34755949 |
aacgttatggccctttgtacactctttactttggttccatgcctaccattgttgcctcaacccctgacttgtttaaacttttccttcaaacccatgaag |
34755851 |
T |
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