View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_low_65 (Length: 215)
Name: NF1709_low_65
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 9382264 - 9382446
Alignment:
| Q |
18 |
aagatacgacttttacataaaaagaaagaagtagggataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaatttt |
117 |
Q |
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| T |
9382264 |
aagatgcgacttttacataaaaagaaggaagtagggataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaatttt |
9382363 |
T |
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| Q |
118 |
gatcctcggcacaatcaagcaatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttccttcctttg |
200 |
Q |
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| T |
9382364 |
gatcctcagcacaatcaagcaatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttccttcctttg |
9382446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 21 - 200
Target Start/End: Original strand, 9399737 - 9399915
Alignment:
| Q |
21 |
atacgacttttacataaaaagaaagaagtagggataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgat |
120 |
Q |
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| T |
9399737 |
atacgacttgtacataaaa-gaaagaagtagagataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgat |
9399835 |
T |
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| Q |
121 |
cctcggcacaatcaagcaatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttccttcctttg |
200 |
Q |
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| T |
9399836 |
cctcggcacaatcaagcaatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttccttcctttg |
9399915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 157
Target Start/End: Complemental strand, 23243915 - 23243822
Alignment:
| Q |
64 |
ttaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgatcctcggcacaatcaagcaatatatcaagaaagtctct |
157 |
Q |
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| T |
23243915 |
ttaccataatcaaggccttaacgtgaaccctttgaattttcatctcagagctttcatcctcgacataatcaagtaggatatcaagaaagtctct |
23243822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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