View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709_low_8 (Length: 499)
Name: NF1709_low_8
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 13 - 478
Target Start/End: Original strand, 5856782 - 5857245
Alignment:
| Q |
13 |
aatattaagtggacttttgtaaagaagaaaaaacaatattgagtactctattaatttgtactaatcaatgtcgtgttattccaaattttcatatttatta |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5856782 |
aatattaagtggacttttgtaaagaagaaaaaacaatattgagtactctattaatttgtactaatcaatgtcgtgtt--tccaaattttcatatttatta |
5856879 |
T |
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| Q |
113 |
acagtaatttatttgttgacaatagacacaattttgataacatcaagaactagagtactctattaaaatccattggaaattctcataaagaaaaagagag |
212 |
Q |
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| T |
5856880 |
atagtaatttatttgttggcaatagacacaattttgataacatcaagaactagagtactctattaaaatccattggaaattctcataaagaaaaagagag |
5856979 |
T |
|
| Q |
213 |
tggaagtgaacattaaaaatgacaaagtttagttcaacttatgggaagattcttctttctgtttttcttttactatcaaatatttgctttcaatttgcaa |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
5856980 |
tggaagtgaacattaaaaatgacaaagtttagttcaacttatgggaaaattcttctttctgtttttcttttactatcaaatatttcctttcaagttgcaa |
5857079 |
T |
|
| Q |
313 |
catgtggctctatagtaaagtttcttcctggatttcaaggaccccttccttttgtgcttgaaactgggtcagttttacacttagctatataattcatggt |
412 |
Q |
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| T |
5857080 |
catgtggctctatagtaaagtttcttcctggatttcaaggaccccttccttttgtgcttgaaaccgggtcagttttacacttagctatataattcatggt |
5857179 |
T |
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| Q |
413 |
tttacaagnnnnnnnnnatctatggtaattaaataatttcatatttatattgtttttaaggtatgt |
478 |
Q |
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| T |
5857180 |
tttacaagtttttttttatctatggtaattaaataatttcatatttatattgtttttaaggtatgt |
5857245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 186 - 478
Target Start/End: Original strand, 5863745 - 5864042
Alignment:
| Q |
186 |
tggaaattctcataaagaaaaagagagt-ggaagtgaacattaaaaatgacaaagtttagttcaacttatgggaagattc---ttctttctgtttttctt |
281 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||| |||| ||| |
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| T |
5863745 |
tggaaattctcataaagaaaaagagagttggaagtgaacattaaaaatgacaaagttaagttcaacttatgggaaggttcatcttctttctattttgctt |
5863844 |
T |
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| Q |
282 |
ttactatcaaatatttgctttcaatttgcaacatgtggctctatagtaaagtttcttcctggatttcaaggaccccttccttttgtgcttgaaactgggt |
381 |
Q |
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| T |
5863845 |
ttactatcaaatatttgctttcaagttgcaacatgtggttctatagtaaagtttcttcctggattccaaggaccccttccttttgcgcttgaaactgggt |
5863944 |
T |
|
| Q |
382 |
cagttttacacttagctatataattcatggttttacaagnnnnnnnnnatctatggtaattaaataatttcatatttata-ttgtttttaaggtatgt |
478 |
Q |
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| T |
5863945 |
cagttatacacttagctatataattcatggttttacaagttttttttattctatggtgtttaaataatttcatatttatatttgtttttaaggtatgt |
5864042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 277 - 390
Target Start/End: Original strand, 5876838 - 5876951
Alignment:
| Q |
277 |
ttcttttactatcaaatatttgctttcaatttgcaacatgtggctctatagtaaagtttcttcctggatttcaaggaccccttccttttgtgcttgaaac |
376 |
Q |
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||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
5876838 |
ttctttttttatcaaatatttgctttcaagttgctacatgtggctctatagtaaagtttcttcctggattccaaggaccccttccttttgtgcttaaaac |
5876937 |
T |
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| Q |
377 |
tgggtcagttttac |
390 |
Q |
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| T |
5876938 |
cgggtcagttttac |
5876951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 46185426 - 46185375
Alignment:
| Q |
330 |
aagtttcttcctggatttcaaggaccccttccttttgtgcttgaaactgggt |
381 |
Q |
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|||| ||||||||| ||||||||||||||||| ||||| || |||||||||| |
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| T |
46185426 |
aagtatcttcctggttttcaaggaccccttccctttgtactagaaactgggt |
46185375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 6992221 - 6992267
Alignment:
| Q |
335 |
tcttcctggatttcaaggaccccttccttttgtgcttgaaactgggt |
381 |
Q |
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| T |
6992221 |
tcttcctggttttcaaggacctcttccttttgaacttgaaactgggt |
6992267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 385
Target Start/End: Original strand, 7010008 - 7010058
Alignment:
| Q |
335 |
tcttcctggatttcaaggaccccttccttttgtgcttgaaactgggtcagt |
385 |
Q |
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||||||||| |||||||| || |||||||||| ||||||||||||||||| |
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| T |
7010008 |
tcttcctggttttcaagggccacttccttttgaacttgaaactgggtcagt |
7010058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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