View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17100_high_2 (Length: 611)
Name: NF17100_high_2
Description: NF17100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17100_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 466; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 11 - 492
Target Start/End: Complemental strand, 15395881 - 15395400
Alignment:
| Q |
11 |
agaatatgctaaaagaaggcaaggaaacaccacgagagtaaatgcaatttgtacagatgacactggaaaattggctaagtcggcaaaaagagcttctgtc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15395881 |
agaatatgctaaaagaaggcaaggaaacaccacgagagtaaatgcaatttgtacagatgacactggaaaattggctaagtcggcaaaaagagcttctgtc |
15395782 |
T |
|
| Q |
111 |
cctgaaagcaatcatcacaagttttcgattttgaattaaccgtttaccttattgaataattttaaaacactaatcaaatcaaaagttatcaaaattaaac |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15395781 |
cctgaaagcaatcatcacaagttttcgattttgaattaacctttttccttattgaataattttaaaacactaatcaaatcaaaagttatcaaaattaaac |
15395682 |
T |
|
| Q |
211 |
aaacctgttatgctaagcaagattccaccaagggaaagccaactatctttgtgtccgtctcttagataccgatacacgtagagaggcgaaaaggctctta |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15395681 |
aaacctgttatgctaagcaagattccaccaagggaaagccaactatctttgtgtccgtctcttagataccgatacacgtagagaggcgaaaaggctctta |
15395582 |
T |
|
| Q |
311 |
agacactgccaccaaatctccacaaattgtaaatacctatacctccaataagaagaaaccaaagaagaacaattggagcaaagagccaaccaactctatc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15395581 |
agacactgccaccaaatctccacaaattgtaaatacctatacctccaataagaagaaaccaaagcagaacaattggagcaaagagccaaccaactctatc |
15395482 |
T |
|
| Q |
411 |
tgtaccataacgttgtatgctgaatagtccaactaatattacaacagcaatcagcacaactactcctgtaacaccaaggcgg |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15395481 |
tgtaccataacgttgtatgctgaatagtccaactaatattacaacagcaaccagcacaactactcctgtaacaccaaggcgg |
15395400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 11 - 486
Target Start/End: Complemental strand, 15387507 - 15387032
Alignment:
| Q |
11 |
agaatatgctaaaagaaggcaaggaaacaccacgagagtaaatgcaatttgtacagatgacactggaaaattggctaagtcggcaaaaagagcttctgtc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15387507 |
agaatatgctaaaagaaggcaaggaaacaccacgagagtaaatgcaatttgtacagatgacactggaaaattggctaagtcggcaaaaagagcttctgtc |
15387408 |
T |
|
| Q |
111 |
cctgaaagcaatcatcacaagttttcgattttgaattaaccgtttaccttattgaataattttaaaacactaatcaaatcaaaagttatcaaaattaaac |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15387407 |
cctgaaagcaatcatcacaagttttcgattttgaattaaccatttgccttattgaataattttaaaacactaatcaaatcaaaagttatcaaaattaaac |
15387308 |
T |
|
| Q |
211 |
aaacctgttatgctaagcaagattccaccaagggaaagccaactatctttgtgtccgtctcttagataccgatacacgtagagaggcgaaaaggctctta |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15387307 |
aaacctgttatgctaagcaagattccaccaagggaaagccaactatctttgcgtccgtctcttagataccgatacacgtagagaggcgaaaaggctctta |
15387208 |
T |
|
| Q |
311 |
agacactgccaccaaatctccacaaattgtaaatacctatacctccaataagaagaaaccaaagaagaacaattggagcaaagagccaaccaactctatc |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15387207 |
agacactgccaccaaatctccacaaattgtaaatacctatacccccaataagaagaaaccaaagcagaacaattggagcaaagagccaaccaactctatc |
15387108 |
T |
|
| Q |
411 |
tgtaccataacgttgtatgctgaatagtccaactaatattacaacagcaatcagcacaactactcctgtaacacca |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15387107 |
tgtaccataacgttgtatgctgaatagtccaactaatattacaacagcaaccagcacaactactcctgtaacacca |
15387032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 534 - 595
Target Start/End: Complemental strand, 15395353 - 15395292
Alignment:
| Q |
534 |
ctagaaactataatctcatattcatagtggaagacataaaagattaatgtatgttaaaggtg |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15395353 |
ctagaaactataatctcatattcatagtggaagacataaaagattaatgtatgttaaaggtg |
15395292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 537 - 595
Target Start/End: Complemental strand, 15386988 - 15386929
Alignment:
| Q |
537 |
gaaactataatctcatattcatagtggaagacataaaagattaatgt-atgttaaaggtg |
595 |
Q |
| |
|
||||||||||||| |||| ||| |||||||||||| ||||||||||| |||||||||||| |
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|
| T |
15386988 |
gaaactataatcttatatacattgtggaagacatagaagattaatgtaatgttaaaggtg |
15386929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 343 - 461
Target Start/End: Original strand, 38667782 - 38667900
Alignment:
| Q |
343 |
atacctatacctccaataagaagaaaccaaagaagaacaattggagcaaagagccaaccaactctatctgtaccataacgttgtatgctgaatagtccaa |
442 |
Q |
| |
|
||||| |||||||| || || ||||||||||| || |||||||||||||||||||||| |||| | ||||| |||||| |||| | |||||| | ||||| |
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|
| T |
38667782 |
ataccaatacctcctattaggagaaaccaaaggaggacaattggagcaaagagccaactaactttgtctgtgccataatgttgcaggctgaaaaatccaa |
38667881 |
T |
|
| Q |
443 |
ctaatattacaacagcaat |
461 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
38667882 |
ctaatattacaacagcaat |
38667900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 38667219 - 38667321
Alignment:
| Q |
11 |
agaatatgctaaaagaaggcaaggaaacaccacgagagtaaatgcaatttgtacagatgacactggaaaattggctaagtcggcaaaaagagcttctgtc |
110 |
Q |
| |
|
|||||| |||||||||||||| |||||||| || ||||||||||||| ||||||| ||| || ||||||| | || |||||| |||||||| || ||| |
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| T |
38667219 |
agaataggctaaaagaaggcagggaaacacaaccagagtaaatgcaagctgtacagctgagaccggaaaatgagataggtcggcgaaaagagcctccgtc |
38667318 |
T |
|
| Q |
111 |
cct |
113 |
Q |
| |
|
||| |
|
|
| T |
38667319 |
cct |
38667321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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