View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17100_low_1 (Length: 684)
Name: NF17100_low_1
Description: NF17100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17100_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 619; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 6 - 667
Target Start/End: Original strand, 24690380 - 24691038
Alignment:
| Q |
6 |
agcagcacagaaccagctgaatgcacattgcagcctcatcattattgttgtatttaccaagacttaaaaaactgaaatgaaacaacaatagcatcatgtg |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24690380 |
agcaccacaaaaccagctgaatgcacattgcagcctcatcattattgt---atttaccaagacttaaaaaactgaaatgaaacaacaatagcatcatgtg |
24690476 |
T |
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| Q |
106 |
gacttcgagagtcatcaaaacaaataatatttcagtgtaactttgttagtgaactgaagatccatgatctgcatactgaacctcataatattcatactgg |
205 |
Q |
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| T |
24690477 |
gacttcgagagtcatcaaaacaaataatatttcagtgtaactttgttagtgaactgaagatccatgatctgcatactgaacctcataatattcatactgg |
24690576 |
T |
|
| Q |
206 |
tcatctaggcctgcgcagtgatggtctgatgattactgcactcacattgcgaagagttgatcttaagaactggtccataccactgattcacacttcagag |
305 |
Q |
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| T |
24690577 |
tcatctaggcctgcgcagtgatggtctgatgattactgcactcacattgcgaagagttgatcttaagaactggtccataccactgattcacacttcagag |
24690676 |
T |
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| Q |
306 |
caaggaccatcagtttgactttgccttggtgcaacctttacatggtgcatcaccttgaaccaagtgagctcgctacctaagaaaatgtcaaggtcataaa |
405 |
Q |
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| T |
24690677 |
caaggaccatcagtttgactttgccttggtgcaacctttacatggtgcatcaccttgaaccaagtgagctcgctacctaagaaaatgtcaaggtcataaa |
24690776 |
T |
|
| Q |
406 |
actttggaggggagggatggtcaatgttgagagtgattgtataatggatataaaatatcaacttgacattcaaaactaattcaattcagaaattcaataa |
505 |
Q |
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| T |
24690777 |
actttggaggggagggatggtcaatgttgagagtgattgtataatggatataaaatatcaacttgacattcaaaactaattcaattcagaaattcaataa |
24690876 |
T |
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| Q |
506 |
tcctgtttgatttattgtgtgagaataaaaggtcctaattaaaatatgtgaagctttagaaggagaaacagccnnnnnnngaccctgtttgctgtcaata |
605 |
Q |
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| T |
24690877 |
tcctgtttgatttattgtgtgagaataaaaggtcctaattaaaatatgtgaagctttagaaggagaaacagccaaaaaaagaccctgtttgctgtcaata |
24690976 |
T |
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| Q |
606 |
tagccattcataaagagtcccatctcgaatatttagttttatctttttagaaggaaatacgt |
667 |
Q |
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| T |
24690977 |
tagccattcataaagagtcccatctcgaatatttagttttatctttttagaaggaaatacgt |
24691038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 24717745 - 24717826
Alignment:
| Q |
18 |
ccagctgaatgcacattgcagcctcatcattat-tgttgtatttaccaagacttaaaaaactgaaatgaaacaacaatagca |
98 |
Q |
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| T |
24717745 |
ccagctgagtgcacactgcagtctcatcaatagctgatgtattcaacaagacttaaaaaactgaaacaaaacaacaatagca |
24717826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 72 - 106
Target Start/End: Original strand, 24630845 - 24630879
Alignment:
| Q |
72 |
aaaaactgaaatgaaacaacaatagcatcatgtgg |
106 |
Q |
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| T |
24630845 |
aaaaactgaaatgaaacaacaatagcattatgtgg |
24630879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 319 - 415
Target Start/End: Original strand, 10330688 - 10330785
Alignment:
| Q |
319 |
tttgactttgccttggtgcaacctttacatggtgcatcaccttgaa-ccaagtgagctcgctacctaagaaaatgtcaaggtcataaaactttggagg |
415 |
Q |
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||||||||| |||| ||||||||||||||||||||||||| |||| ||||||||| || |||||| || || ||||||||||||| ||||||||| |
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| T |
10330688 |
tttgactttaccttagtgcaacctttacatggtgcatcacactgaacccaagtgaggtcactacctgagtcgatatcaaggtcataaagctttggagg |
10330785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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