View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17101_high_4 (Length: 356)
Name: NF17101_high_4
Description: NF17101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17101_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 25742824 - 25743150
Alignment:
| Q |
18 |
aattagctggtgcaggcggctttggagcttctttcttcggattctttgctgctgttgctgctatgtacgttcctttaactctatccgataccgacacata |
117 |
Q |
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| T |
25742824 |
aattagctggtgtaggcggctttggagcttctttcttcggattctttgctgctgttgctgctatgtacgttcctttaactctatccgataccgacacata |
25742923 |
T |
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| Q |
118 |
caattacattgaattatacgtacttgtgtctgtgcttcatagactctatctattaatttatcatcatttgcaattttaattttattcaagtgtgtatgaa |
217 |
Q |
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| T |
25742924 |
taattacattgaattatacgtacttctgtctgtgcttcatagactctatctattaatttatcatcatttgcaattttaattttattcaagtgtgtatgaa |
25743023 |
T |
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| Q |
218 |
ttctttcatttgtcgaaactatgtatatgagtttattttgtcaattgatgtttatatatggattgtgttatttgcttgtccaacatcttaggtatgttta |
317 |
Q |
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| T |
25743024 |
ttctttcatttttcgaaactatgtatatgagtttattttgtcaattgatg-ttatatatggattgtgttatttgcttgtccaacatcttaggtatgttta |
25743122 |
T |
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| Q |
318 |
aggttgttgtttgtgtgttcaagttcat |
345 |
Q |
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| T |
25743123 |
aggttgttgtttgtgtgttcaagttcat |
25743150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 41 - 195
Target Start/End: Original strand, 25739284 - 25739430
Alignment:
| Q |
41 |
ggagcttctttcttcggattctttgctgctgttgctgctatgtacgtt-cctttaactctatccgataccgacacatacaattacattgaattatacgta |
139 |
Q |
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| T |
25739284 |
ggaggttctttctttggattctttgctgctgttgctgctatgtacgttacctttaactctatccgacaccgacatatataattacatcgtgt-------- |
25739375 |
T |
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| Q |
140 |
cttgtgtctgtgcttcatagactctatctattaatttatcatcatttgcaatttta |
195 |
Q |
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| T |
25739376 |
cctgagtc-gtgcttcataggctctatctattaatttatcatcatttaccatttta |
25739430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 341
Target Start/End: Original strand, 25739493 - 25739540
Alignment:
| Q |
294 |
tgtccaacatcttaggtatgtttaaggttgttgtttgtgtgttcaagt |
341 |
Q |
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| T |
25739493 |
tgtccaacatcgtaggtatgtttaaggttgttgtttgtgtgttaaagt |
25739540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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