View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17101_high_7 (Length: 252)
Name: NF17101_high_7
Description: NF17101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17101_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 2888055 - 2887813
Alignment:
| Q |
1 |
tttccaatatgatcatagttggtactataattattaatccatattttcaaataaattttcttacctgtacaactcagaatttttgtatgcatgatgaaaa |
100 |
Q |
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| T |
2888055 |
tttccaatatgatcatagttggtacta-aattatgaatccatattttcaaataaatttgcttacctgtacaactcagaatttttgtatgcatgatgaaaa |
2887957 |
T |
|
| Q |
101 |
tcaattcctaaagtaagttcttgtgctgaactcgaaacttccaacatccaagttgctggattatagccatctttgattttactaaccccttcaatgctct |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2887956 |
tcaattcctagagtaagttcttgtgctgaactcgaaacttccaacatccaagttgctggattatagccatctttgattttactaaccccttcaatgctct |
2887857 |
T |
|
| Q |
201 |
aaacaacagaaaatattagaagataatcttccaagtagaattat |
244 |
Q |
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| T |
2887856 |
aaacaacagaaaatattagaagataatcttccaagtagaattat |
2887813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 60 - 219
Target Start/End: Original strand, 2896357 - 2896517
Alignment:
| Q |
60 |
cttacctgtacaactcagaatttttgtatgcatgatgaaaatcaattcctaaagtaagttcttgtgctgaactcgaaacttccaacatccaagttgctgg |
159 |
Q |
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| T |
2896357 |
cttacctgtacaactcagaatttttgtatatatcatgaaaatcaacacctaaagtatgttcttgtgctgaacttgtaacttccaacatccaagttgctgg |
2896456 |
T |
|
| Q |
160 |
attatagccatctttgattttactaaccccttcaatgctct-aaacaacagaaaatattag |
219 |
Q |
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| T |
2896457 |
attatagccatctttaattttactaaccccttcgatgctctaaaacaacagaaaatattag |
2896517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 221
Target Start/End: Complemental strand, 2878478 - 2878314
Alignment:
| Q |
57 |
tttcttacctgtacaactcagaatttttgtatgcatgatgaaaatcaattcctaaagtaagttcttgtgctgaactcgaaacttccaacatccaagttgc |
156 |
Q |
| |
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|||||||||| || | |||||||||||||||| | |||||||||| ||||| | || ||||||||||| ||||| ||||| |||||||| ||||| |
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| T |
2878478 |
tttcttacctatatagctcagaatttttgtatatctcatgaaaatcagcacctaatgcaacttcttgtgctggactcgtcacttctaacatccatgttgc |
2878379 |
T |
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| Q |
157 |
tggattatagccatctttgattttactaaccccttcaatgctctaaacaacagaaaatattagaa |
221 |
Q |
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| T |
2878378 |
tgggttatatccatcgtttattttacttactccttcaatactctagacaatagaaaatataagaa |
2878314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 44222379 - 44222465
Alignment:
| Q |
114 |
taagttcttgtgctgaactcgaaacttccaacatccaagttgctggattatagccatctttgattttactaaccccttcaatgctct |
200 |
Q |
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| T |
44222379 |
taagttcttgtgctgtagttgtaacttccaacatccatgttgctgggttatatccatctttgattttactaactccgtcaatgctct |
44222465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 200
Target Start/End: Original strand, 44210161 - 44210264
Alignment:
| Q |
97 |
aaaatcaattcctaaagtaagttcttgtgctgaactcgaaacttccaacatccaagttgctggattatagccatctttgattttactaaccccttcaatg |
196 |
Q |
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|||||||| || ||| ||||||||||||| | | | | ||||||||||||||| |||||||| ||||| || |||||||||||||| || || |||||| |
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| T |
44210161 |
aaaatcaacacccaaattaagttcttgtgcggtagttgtaacttccaacatccatgttgctgggttatatccgtctttgattttactcactccgtcaatg |
44210260 |
T |
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| Q |
197 |
ctct |
200 |
Q |
| |
|
|||| |
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| T |
44210261 |
ctct |
44210264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 44233199 - 44233285
Alignment:
| Q |
114 |
taagttcttgtgctgaactcgaaacttccaacatccaagttgctggattatagccatctttgattttactaaccccttcaatgctct |
200 |
Q |
| |
|
||||||||||||| | | | | ||||||||||||||| |||||||| ||||| || |||||||||||||| || || |||||||||| |
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| T |
44233199 |
taagttcttgtgcggtagttgtaacttccaacatccatgttgctgggttatatccgtctttgattttactcactccgtcaatgctct |
44233285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 39573967 - 39574023
Alignment:
| Q |
118 |
ttcttgtgctgaactcgaaacttccaacatccaagttgctggattatagccatcttt |
174 |
Q |
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| T |
39573967 |
ttcttttgctgagctagtaacttccaacatccaagttgctggattgtagccatcttt |
39574023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 39339610 - 39339556
Alignment:
| Q |
137 |
acttccaacatccaagttgctggattatagccatctttgattttactaacccctt |
191 |
Q |
| |
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|||||||||||||| |||||||||||||| || |||||||| || ||||| |||| |
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| T |
39339610 |
acttccaacatccatgttgctggattataaccgtctttgatcttgctaacacctt |
39339556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 39354451 - 39354397
Alignment:
| Q |
137 |
acttccaacatccaagttgctggattatagccatctttgattttactaacccctt |
191 |
Q |
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|||||||||||||| |||||||||||||| || |||||||| || ||||| |||| |
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| T |
39354451 |
acttccaacatccatgttgctggattataaccgtctttgatctttctaacacctt |
39354397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 39588464 - 39588501
Alignment:
| Q |
137 |
acttccaacatccaagttgctggattatagccatcttt |
174 |
Q |
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|||||||| |||||||||||||||||||| |||||||| |
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| T |
39588464 |
acttccaaaatccaagttgctggattatatccatcttt |
39588501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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