View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17101_low_1 (Length: 621)
Name: NF17101_low_1
Description: NF17101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17101_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 569; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 14 - 602
Target Start/End: Complemental strand, 3879528 - 3878940
Alignment:
| Q |
14 |
agagagagacggatcaataatagaattatagtgcttttctggggagagagaaaatgaagcagaaacatacttgcgacagtacgccaatctaatattcttc |
113 |
Q |
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| T |
3879528 |
agagagagacggatcaataatagaattatagtgcttttctggggagagagaaaatgaagcagaaacatacttgcgacagtacgccaatctaatattcttc |
3879429 |
T |
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| Q |
114 |
aaacgtggaagatccaacgacgcttaagtcaatagactgcaactgcggagttacaaaacctgcattggcggggtgataaaatgtattaatcgtaatactc |
213 |
Q |
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| T |
3879428 |
aaatgtggaagatccaacgacgctcaagtcaatagactgcaactgcggagttacaaaacctgcattggcggggtggttaaatgtattaatcgtaatactc |
3879329 |
T |
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| Q |
214 |
atgaattcagacatgtcattaatatcaatatctgggacagataaaatacctccaacatagagctatgagctatagcagccattgatgcagaagtgatgcc |
313 |
Q |
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| T |
3879328 |
atgaattcagacatgtcattaatatcaatatctgggacagataaaatacctccaacatagagctatgagctatagcagccattgatgcagaagtgatgcc |
3879229 |
T |
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| Q |
314 |
ctcgcagctatgaagccttagaattgtcaacattgtcatccgaaccgacttaaaagagaaaagccatatactttagttcaaaatacaagcttacatatgc |
413 |
Q |
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| T |
3879228 |
ctcgcagctatgaagccttagaattgtcaacattgtcatccgaaccgacttaaaagagaaaagccatatactttagttcaaaatacaagcttacatatgc |
3879129 |
T |
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| Q |
414 |
aaaaaagcgagtatacaatttgaagcacacctccaaagatatgcttgggcagtatgatgaatcaagaaaaccaagattaggacaatgctgcgctatttca |
513 |
Q |
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| T |
3879128 |
aaaaaagcgagtatacaatttgaagcacacctccaaagatatgcttgggcagtatgatgaatcaagaaaaccaagattaggacaatgctgcgctatttca |
3879029 |
T |
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| Q |
514 |
cgcagggtttcatcgctgacacaagaacagttacgcatgtccagcttcaccagttgagggcatgaagttgcagcagcacgaataacagc |
602 |
Q |
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| T |
3879028 |
cgcagggtttcatcgctgacacaagaacagttacgcatgtccagcttcaccagttgagggcatgaagttgcaacagcacgaataacagc |
3878940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 47 - 602
Target Start/End: Complemental strand, 3865513 - 3864943
Alignment:
| Q |
47 |
cttttctggggagagagaaaatgaagcagaaacatacttgcgacagtacgccaatctaatattcttcaaacgtggaagatccaacgacgcttaagtcaat |
146 |
Q |
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| T |
3865513 |
cttttctggggagagagaaaatgaagcagaaacatacttgcgacagtacaccaatctaatattctgcaaacgtggaagatccaacgacaccgaagtcaat |
3865414 |
T |
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| Q |
147 |
agactgcaactgcggagttacaaaacctgcattggcggggtgataaaatgtattaatcgtaatactcatgaattcagacatgtcattaatatcaatatct |
246 |
Q |
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| T |
3865413 |
agactgcaattgtcaagctccaaaacctgcattggcag--ttatgtcatgtactcgtcctaatactcgggaattcagacaagtcgttaatatcaatatct |
3865316 |
T |
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| Q |
247 |
gggacagataaaatacctccaacatagagctatgagctatagcagccattgatgcagaagtgatgccctcgcagctatgaagccttagaattgtcaacat |
346 |
Q |
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| T |
3865315 |
ggaacaaataacatacctccaacatagaactgtgagctattgcagccattgacgcagaagtgatgccctcacagctatgaagtcttagaatggtcaacat |
3865216 |
T |
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| Q |
347 |
tgtcatccgaaccgacttaaaagagaaa------------------agccatatactttagttcaaaatacaagcttacatatgcaaaaaagcgagtata |
428 |
Q |
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|| | ||||| ||||||||| ||||| ||| | | ||| | ||||||||||||| |||| |||||||||||| |||||| |
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| T |
3865215 |
tgggagtcgaacagacttaaaaaagaaaggtgaccgtgtcagacaaagctagaaactcttgttcaaaatacaatcttaaatatgcaaaaaata-agtata |
3865117 |
T |
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| Q |
429 |
caatttgaagcacacctccaaagatatgcttgggcagtatgatgaatcaagaaaaccaagattaggacaatgctgcgctatttcacgcagggtttcatcg |
528 |
Q |
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|| ||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||||||| |
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| T |
3865116 |
cagtttaaagcacacctccaaagatatgtttgggcagtatgatgcatcaagaaaaccaagattaggacaatgttgtgctatttcacgcagtgtttcatcg |
3865017 |
T |
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| Q |
529 |
ctgacacaagaacagttacgcatgtccagcttcaccagttgagggcatgaagttgcagcagcacgaataacagc |
602 |
Q |
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|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
3865016 |
ctgacacaagaacaattacgcatgtccagtttcactagttgagggcatgaagttgcagcagcacgaatagcagc |
3864943 |
T |
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