View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17101_low_12 (Length: 215)

Name: NF17101_low_12
Description: NF17101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17101_low_12
NF17101_low_12
[»] chr4 (3 HSPs)
chr4 (1-215)||(2888092-2888306)
chr4 (1-215)||(2896061-2896275)
chr4 (2-207)||(2878591-2878796)
[»] chr2 (3 HSPs)
chr2 (28-207)||(44232830-44233009)
chr2 (29-207)||(44222004-44222182)
chr2 (29-207)||(44209809-44209987)
[»] chr7 (8 HSPs)
chr7 (89-135)||(39339867-39339913)
chr7 (89-135)||(39354688-39354734)
chr7 (96-135)||(39563086-39563125)
chr7 (87-135)||(39573625-39573673)
chr7 (101-135)||(39367301-39367335)
chr7 (89-135)||(39546293-39546339)
chr7 (97-146)||(39620948-39620997)
chr7 (86-138)||(39588129-39588181)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 2888092 - 2888306
Alignment:
Q  1 caagcaacttatagaagaattaggcaaacctgcacctggttcaaatgatctttatttctctgcccaatactcacaatcatttttagtccaatgtttggct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2888092 caagcaacttatagaagaattaggcaaacctgcacctggttcaaatgatctttatttctctgcccaatactcacaatcatttttagtccaatgtttggct 2888191  T
Q  101 tgcttatggaaacaacattggtcatattggcgcaacccgccatacacttctgtgaggtttttcttcactgttttcataggcttgatgtttggaacaatat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2888192 tgcttatggaaacaacattggtcatattggcgcaacccgccatacacttctgtgaggtttttcttcactgttttcataggcttgatgtttggaacaatat 2888291  T
Q  201 tttgggatcttggaa 215  Q
    |||||||||||||||    
T  2888292 tttgggatcttggaa 2888306  T

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Target: chr4; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 2896275 - 2896061
Alignment:
Q  1 caagcaacttatagaagaattaggcaaacctgcacctggttcaaatgatctttatttctctgcccaatactcacaatcatttttagtccaatgtttggct 100  Q
    |||||||||||||| |||||||||||||||||| |||||||| || |||||| ||||||| ||||||||||||||||||||||   ||||||| ||||||    
T  2896275 caagcaacttatagtagaattaggcaaacctgctcctggttctaaggatcttcatttctccgcccaatactcacaatcattttggatccaatgcttggct 2896176  T
Q  101 tgcttatggaaacaacattggtcatattggcgcaacccgccatacacttctgtgaggtttttcttcactgttttcataggcttgatgtttggaacaatat 200  Q
    ||| |||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||  ||||||||  ||||||||||||||||| |    
T  2896175 tgcctatggaaacaacattggtcatactggcgcaatccgccatacactgctgtgaggtttttcttcactactttcatagcattgatgtttggaacaatgt 2896076  T
Q  201 tttgggatcttggaa 215  Q
    | ||| | |||||||    
T  2896075 tctggaaccttggaa 2896061  T

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Target: chr4; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 2878591 - 2878796
Alignment:
Q  2 aagcaacttatagaagaattaggcaaacctgcacctggttcaaatgatctttatttctctgcccaatactcacaatcatttttagtccaatgtttggctt 101  Q
    |||||||||||||||||||| || |||||||| | |||||| || |||||||||||| ||  |||||||||||||||||||||||| ||||| |||||||    
T  2878591 aagcaacttatagaagaattgggaaaacctgctcttggttccaaggatctttatttccctagccaatactcacaatcatttttagttcaatgcttggctt 2878690  T
Q  102 gcttatggaaacaacattggtcatattggcgcaacccgccatacacttctgtgaggtttttcttcactgttttcataggcttgatgtttggaacaatatt 201  Q
    |||| |||||||||| ||||||||||||||||||||||  ||||||| |||| ||||||| |||  ||  ||||||||  ||||||||||||||||| ||    
T  2878691 gcttgtggaaacaacgttggtcatattggcgcaacccgttatacactgctgttaggttttactttgctactttcatagcattgatgtttggaacaatgtt 2878790  T
Q  202 ttggga 207  Q
    ||||||    
T  2878791 ttggga 2878796  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 207
Target Start/End: Complemental strand, 44233009 - 44232830
Alignment:
Q  28 acctgcacctggttcaaatgatctttatttctctgcccaatactcacaatcatttttagtccaatgtttggcttgcttatggaaacaacattggtcatat 127  Q
    |||||| ||||||||||| |||||| ||||| || | |||| ||| || || || || ||||||||   ||| |||||||||||||||| ||||||||||    
T  44233009 acctgctcctggttcaaaggatcttcatttccctactcaattctcgcagtctttcttggtccaatgccaggcctgcttatggaaacaacgttggtcatat 44232910  T
Q  128 tggcgcaacccgccatacacttctgtgaggtttttcttcactgttttcataggcttgatgtttggaacaatattttggga 207  Q
    ||||| || || ||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||| || |||||    
T  44232909 tggcgtaatccaccatacactgctgtgaggtttttcttcactacattcataggcttgatgtttggaacaatgttctggga 44232830  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 29 - 207
Target Start/End: Complemental strand, 44222182 - 44222004
Alignment:
Q  29 cctgcacctggttcaaatgatctttatttctctgcccaatactcacaatcatttttagtccaatgtttggcttgcttatggaaacaacattggtcatatt 128  Q
    ||||| ||||||||||| |||||| ||||| || | |||| ||| || || || || || |||||   ||| |||||||||||||||| |||||||||||    
T  44222182 cctgctcctggttcaaaggatcttcatttccctactcaattctcgcagtctttcttggttcaatgccaggcctgcttatggaaacaacgttggtcatatt 44222083  T
Q  129 ggcgcaacccgccatacacttctgtgaggtttttcttcactgttttcataggcttgatgtttggaacaatattttggga 207  Q
    |||| || || ||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||| || |||||    
T  44222082 ggcgtaatccaccatacactgctgtgaggtttttcttcactaccttcataggcttgatgtttggaacaatgttctggga 44222004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 29 - 207
Target Start/End: Complemental strand, 44209987 - 44209809
Alignment:
Q  29 cctgcacctggttcaaatgatctttatttctctgcccaatactcacaatcatttttagtccaatgtttggcttgcttatggaaacaacattggtcatatt 128  Q
    ||||| ||||||||||| |||||| ||||| || | |||| ||| || || || || ||||||||   ||| |||||||||||||||| |||||||||||    
T  44209987 cctgctcctggttcaaaggatcttcatttccctactcaattctcgcagtctttcttggtccaatgccaggcctgcttatggaaacaacgttggtcatatt 44209888  T
Q  129 ggcgcaacccgccatacacttctgtgaggtttttcttcactgttttcataggcttgatgtttggaacaatattttggga 207  Q
    |||| || || ||||||||| |||||||||||||||||||    ||||||| |||||||||||||||||| || |||||    
T  44209887 ggcgtaatccaccatacactgctgtgaggtttttcttcacgacattcatagccttgatgtttggaacaatgttctggga 44209809  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 39339867 - 39339913
Alignment:
Q  89 caatgtttggcttgcttatggaaacaacattggtcatattggcgcaa 135  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||    
T  39339867 caatgtatggcttgcttatggaaacaacattggtcttattggcgcaa 39339913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 39354688 - 39354734
Alignment:
Q  89 caatgtttggcttgcttatggaaacaacattggtcatattggcgcaa 135  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||    
T  39354688 caatgtatggcttgcttatggaaacaacattggtcttattggcgcaa 39354734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 135
Target Start/End: Complemental strand, 39563125 - 39563086
Alignment:
Q  96 tggcttgcttatggaaacaacattggtcatattggcgcaa 135  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  39563125 tggcttgcttatggaaacaacattggtcttattggcgcaa 39563086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 39573673 - 39573625
Alignment:
Q  87 tccaatgtttggcttgcttatggaaacaacattggtcatattggcgcaa 135  Q
    |||||||| ||||||| |||||||||||||||||||| || ||||||||    
T  39573673 tccaatgtatggcttgtttatggaaacaacattggtcttactggcgcaa 39573625  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 135
Target Start/End: Original strand, 39367301 - 39367335
Alignment:
Q  101 tgcttatggaaacaacattggtcatattggcgcaa 135  Q
    ||||||||||||||||||||||| |||||||||||    
T  39367301 tgcttatggaaacaacattggtcttattggcgcaa 39367335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 39546339 - 39546293
Alignment:
Q  89 caatgtttggcttgcttatggaaacaacattggtcatattggcgcaa 135  Q
    |||||| ||||||| |||||||||||||||||||| || ||||||||    
T  39546339 caatgtatggcttgtttatggaaacaacattggtcttactggcgcaa 39546293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 39620997 - 39620948
Alignment:
Q  97 ggcttgcttatggaaacaacattggtcatattggcgcaacccgccataca 146  Q
    ||||||||||||||||||||||||||| || ||||| || |||| |||||    
T  39620997 ggcttgcttatggaaacaacattggtcttactggcggaatccgcgataca 39620948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 39588181 - 39588129
Alignment:
Q  86 gtccaatgtttggcttgcttatggaaacaacattggtcatattggcgcaaccc 138  Q
    ||||||| | || |||| |||||||||||||||||||| || |||||||||||    
T  39588181 gtccaatttatgacttgtttatggaaacaacattggtcttactggcgcaaccc 39588129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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