View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17101_low_2 (Length: 385)
Name: NF17101_low_2
Description: NF17101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17101_low_2 |
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| [»] scaffold0595 (1 HSPs) |
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Alignment Details
Target: scaffold0595 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: scaffold0595
Description:
Target: scaffold0595; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 14 - 357
Target Start/End: Original strand, 5246 - 5577
Alignment:
| Q |
14 |
gaaggaaccagtgatagtacaacatggagtttttgtggtaagttaaaaacaattcatcgattatatatcttgttttagttagtatttacattatccaaaa |
113 |
Q |
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| T |
5246 |
gaaggaaccagtgatagtacaacatggagtttttgtggtaagttaaaaacaattcatcgattatatatcttgttttagttagtatttacattatccaaaa |
5345 |
T |
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| Q |
114 |
aataaaaatc-aagttttgtatcaatagtatttttgcttatnnnnnnnnnnnnnnncttgaagaagaaaagattcactatcctttaatatccttttcgtt |
212 |
Q |
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| T |
5346 |
aataaaaatcaaagttttgtatcaatagtatttttgcttat-----aaaaaaaaaacttgaagaagaaaagatccactatcctttaatatccttttcgtt |
5440 |
T |
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| Q |
213 |
tcattgactttctaaacttaga---ttgttattaattagaagggtttaaatatattcattagactagatcnnnnnnntaatatacattcattagaaatta |
309 |
Q |
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| T |
5441 |
tcattgactttctaaactt-gattgttgttattaattagaaggg-ttaaatatattcattagactagaccaaaaaaataatat--attc-------atta |
5529 |
T |
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| Q |
310 |
actataaattcttaaatttaagagtttctcaattttactttatgacaa |
357 |
Q |
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| T |
5530 |
actataaattcttaaatttaagagtttctcaattttactctataacaa |
5577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 14 - 361
Target Start/End: Original strand, 8341239 - 8341573
Alignment:
| Q |
14 |
gaaggaaccagtgatagtacaacatggagtttttgtggtaagttaaaaacaattcatcgattatatatcttgttttagttagtatttacattatccaaaa |
113 |
Q |
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| T |
8341239 |
gaaggaaccagtgatagtacaacatggagtttttgtggtaagttaaaaacaattcatcgattatatatcttgttttagttagtatttacattatccaaaa |
8341338 |
T |
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| Q |
114 |
aataaaaatc-aagttttgtatcaatagtatttttgcttatnnnnnnnnnnnnnnncttgaagaagaaaagattcactatcctttaatatccttttcgtt |
212 |
Q |
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| T |
8341339 |
aataaaaatcaaagttttgtatcaatagtatttttgcttat-----aaaaaaaaaacttgaagaagaaaagatccactatcctttaatatccttttcgtt |
8341433 |
T |
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| Q |
213 |
tcattgactttctaaacttaga---ttgttattaattagaagggtttaaatatattcattagactagatcnnnnnnntaatatacattcattagaaatta |
309 |
Q |
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| T |
8341434 |
tcattgactttctaaactt-gattgttgttattaattagaaggg-ttaaatatattcattagactaga-ccaaaaaataatat--attc-------atta |
8341521 |
T |
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| Q |
310 |
actataaattcttaaatttaagagtttctcaattttactttatgacaacgtt |
361 |
Q |
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| T |
8341522 |
actataaattcttaaatttaagagtttctcaattttactctataacaacgtt |
8341573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 8337037 - 8337102
Alignment:
| Q |
14 |
gaaggaaccagtgatagtacaacatggagtttttgtggtaagttaaaaacaattcatcgattatata |
80 |
Q |
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| T |
8337037 |
gaaggagccagtgatagtacaacatggagttgcagtggtaagtt-acaacaatccatcaattatata |
8337102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 8337152 - 8337194
Alignment:
| Q |
111 |
aaaaataaaaat-caagttttgtatcaatagtatttttgctta |
152 |
Q |
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| T |
8337152 |
aaaaataaaaatacaagttttgcatcaatagtatttttgctta |
8337194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 8337204 - 8337254
Alignment:
| Q |
169 |
cttgaagaagaaaagattcactatcctttaatatccttttcgtttcattga |
219 |
Q |
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| T |
8337204 |
cttgaagaagagaagatccaccaccctttaatatcctttacgtttcattga |
8337254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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