View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17101_low_3 (Length: 381)
Name: NF17101_low_3
Description: NF17101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17101_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 4137576 - 4137939
Alignment:
| Q |
1 |
ttttttaaatcttggtattccggtctagatgagatcgcgtaccttttttaatctttagtatcgcgaaccaaatcaagattgcataccgttttaaaaatgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4137576 |
ttttttaaatcttggtattccggtctagatgagatcgcgtaccttttttaatctttagtatcgcgaaccaaatcaagattgcatacctttttaaaaatgt |
4137675 |
T |
|
| Q |
101 |
tggtaaatccttaaagcaaattataacaaattgaaatcctatcatgaaccttaaataaaatacctgaagaccagcccatcctttttgaatgtcatcttca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4137676 |
tggtaaatccttaaagcaaattataacaaattgaaatcctatcatgaacctaaaataaaatacctgaagaccagcccatcctttttgaatgtcatcttca |
4137775 |
T |
|
| Q |
201 |
ctagtgtcggactcttccgcccatgcccataatattctcctgttcttagcatggtcaaaaaatgactttgaagcataaacctttccatagtcaaatctca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4137776 |
ctagtgtcggactcttccgcccatgcccataatattctcctgttcttagcatggtcaaaaaatgactttgaagcataaacctttccatagtcaaatctca |
4137875 |
T |
|
| Q |
301 |
attccttccaagttccagtatattttacatcaggaacaaactcttccttatcagatacatattt |
364 |
Q |
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| T |
4137876 |
attccttccaagttccagtatattttacatcaggaacaaactcttccttatcagatacatattt |
4137939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 160 - 355
Target Start/End: Original strand, 4142469 - 4142664
Alignment:
| Q |
160 |
atacctgaagaccagcccatcctttttgaatgtcatcttcactagtgtcggactcttccgcccatgcccataatattctcctgttcttagcatggtcaaa |
259 |
Q |
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||||||| ||||||||||||||| ||| |||| ||||||| | ||||| |||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
4142469 |
atacctgtagaccagcccatcctctttcaatgccatcttctttggtgtcagactctaatacccatgcccataatattctcctgttcttagcatagtcaaa |
4142568 |
T |
|
| Q |
260 |
aaatgactttgaagcataaacctttccatagtcaaatctcaattccttccaagttccagtatattttacatcaggaacaaactcttccttatcaga |
355 |
Q |
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| T |
4142569 |
aaatgactttgaagcataaaaattaccatagtcaaatatcaattccttccaagttccagtaaatttttcatcaggaataaacttttcctgatcaga |
4142664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 114 - 355
Target Start/End: Original strand, 4128966 - 4129209
Alignment:
| Q |
114 |
aagcaaattataacaaa--ttgaaatcctatcatgaaccttaaataaaatacctgaagaccagcccatcctttttgaatgtcatcttcactagtgtcgga |
211 |
Q |
| |
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||||||||||||||||| | ||||| ||||| || || |||||||||||||| | ||||||||||||||| | ||| ||||||| || ||| |
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| T |
4128966 |
aagcaaattataacaaaaataaaaatcttatcacaaaactaaaataaaatacctgtaaaccagcccatcctttatcaatctcatcttgttcagagtcatt |
4129065 |
T |
|
| Q |
212 |
ctcttccgcccatgcccataatattctcctgttcttagcatggtcaaaaaatgactttgaagcataaacctttccatagtcaaatctcaattccttccaa |
311 |
Q |
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|| ||| ||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||| || || || ||| |
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| T |
4129066 |
ttcctccacccatccccataatattctcctattcttagcatagtcaaaaaatgactttgaagcataaaaaaggccatagtcaaatcttaagtctttgcaa |
4129165 |
T |
|
| Q |
312 |
gttccagtatattttacatcaggaacaaactcttccttatcaga |
355 |
Q |
| |
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||||| ||||| ||||||||||||| ||| | ||||| |||||| |
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| T |
4129166 |
gttcctgtataatttacatcaggaataaatttttcctgatcaga |
4129209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 154 - 364
Target Start/End: Original strand, 4117821 - 4118031
Alignment:
| Q |
154 |
aataaaatacctgaagaccagcccatcctttttgaatgtcatcttcactagtgtcggactcttccgcccatgcccataatattctcctgttcttagcatg |
253 |
Q |
| |
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|||||| |||||| | ||| ||||||||||| | || ||||||| ||| ||| ||||| | | ||||| |||| |||||||| || |||||||||| |
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| T |
4117821 |
aataaattacctgcaaacctgcccatcctttctctatatcatcttgtgtagagtcagactcattcacccatccccacaatattcttctattcttagcata |
4117920 |
T |
|
| Q |
254 |
gtcaaaaaatgactttgaagcataaacctttccatagtcaaatctcaattccttccaagttccagtatattttacatcaggaacaaactcttccttatca |
353 |
Q |
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||||||||||||||||||||||||| || |||||||||||||| || || || | |||||| ||| | | ||||||||||||||| | |||||||||| |
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| T |
4117921 |
atcaaaaaatgactttgaagcataaaatttaccatagtcaaatcttaaatctttactagttcctgtaaactctacatcaggaacaaagttttccttatca |
4118020 |
T |
|
| Q |
354 |
gatacatattt |
364 |
Q |
| |
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|| |||||||| |
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| T |
4118021 |
gaaacatattt |
4118031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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