View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17101_low_6 (Length: 296)
Name: NF17101_low_6
Description: NF17101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17101_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 277
Target Start/End: Complemental strand, 5353362 - 5353100
Alignment:
| Q |
15 |
agcacagatgagggaacatttccgttgaaagaattgaaccctaaattgacgcttacaagattaatgaggccctcgaagtgatcagatggtaaattcccac |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5353362 |
agcacagatgagggaacatttccgttgaaagaattgaaccctaaattgacgcttacaagattaatgaggccctcgaaatgatcagatggtaaattcccac |
5353263 |
T |
|
| Q |
115 |
ttaaatgattgagaaaaagtgatatatatgtgagatttttggacatattgaaagaagggagtggacctgttagattattcgaagatagatcgagataaag |
214 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5353262 |
ttaaatgattgagaaaaagagatatatatgtgaggtttttggacatattgaaagaagggagtggacctgttagattattcgaagatagatcgagataaag |
5353163 |
T |
|
| Q |
215 |
aagttgggtgagttttgacattgatctaggaagtgttccattgaattggcagtaagatagatc |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5353162 |
aagttgggtgagttttgacattgatctaggaagtgttccattgaattgacagtaagatagatc |
5353100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 39 - 277
Target Start/End: Complemental strand, 5392004 - 5391766
Alignment:
| Q |
39 |
ttgaaagaattgaaccctaaattgacgcttacaagattaatgaggccctcgaagtgatcagatggtaaattcccacttaaatgattgagaaaaagtgata |
138 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| || |||||||| || |||||||||| ||| || |||||||||||||| || |||| |
|
|
| T |
5392004 |
ttgaaagaattgaaccctaaatcaatgcttacaagattttgaagcccctcgaaatggctggatggtaaatccccgctcaaatgattgagaaatagggata |
5391905 |
T |
|
| Q |
139 |
tatatgtgagatttttggacatattgaaagaagggagtggacctgttagattattcgaagatagatcgagataaagaagttgggtgagttttgacattga |
238 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||| || | || ||||| | || ||||| | |||||||||||||| ||||||||| |
|
|
| T |
5391904 |
gatatgtgagattcttcgacatattgaaagaagggagtggacctgtgaggtagttggaagacatgtctagatacacaagttgggtgagttctgacattga |
5391805 |
T |
|
| Q |
239 |
tctaggaagtgttccattgaattggcagtaagatagatc |
277 |
Q |
| |
|
|| ||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
5391804 |
actgggaagtgttccgttgaattggcaataagatagatc |
5391766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 5425022 - 5425281
Alignment:
| Q |
18 |
acagatgagggaacatttccgttgaaagaattgaaccctaaattgacgcttacaagattaatgaggccctcgaagtgatcagatggtaaattcccactta |
117 |
Q |
| |
|
|||||||| || ||| | |||||||||||||||||||||||||||| ||| |||||||| ||||||||||| || |||| ||||||||||| ||||||| |
|
|
| T |
5425022 |
acagatgatggcacactcccgttgaaagaattgaaccctaaattgatgctaacaagatttatgaggccctcaaaatgatttgatggtaaatttccactta |
5425121 |
T |
|
| Q |
118 |
aatgattgagaaaaagtgatatatatgtgagatttttggacatattgaaagaagggagtggacctgttagattattcgaagatagatcgagataaagaag |
217 |
Q |
| |
|
||| ||| ||| || ||||||||| |||| || |||||||| | |||||||||||| ||||| | ||||| | || | || ||||||| ||| |
|
|
| T |
5425122 |
aataatttcgaaggagggatatatatctgaggttcttggacatgcttaaagaagggagtaagcctgtgaagttattaaatgacaagtctagataaacaag |
5425221 |
T |
|
| Q |
218 |
ttgggtgagttttgacattgatctaggaagtgttccattgaattggcagtaagatagatc |
277 |
Q |
| |
|
||||||||| || |||||||| || ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5425222 |
ttgggtgagcttagacattgaactgggaagtgttccattgaattggcagtgagatagatc |
5425281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 21 - 274
Target Start/End: Original strand, 5347705 - 5347958
Alignment:
| Q |
21 |
gatgagggaacatttccgttgaaagaattgaaccctaaattgacgcttacaagattaatgaggccctcgaagtgatcagatggtaaattcccacttaaat |
120 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||||||||||| ||| |||||||| ||||||||||| || || | ||| |||||| |||||||||| |
|
|
| T |
5347705 |
gatgatggaacattcccattgaaagaattgaaccctaaattgatgctaacaagatttatgaggccctcaaaatggttggattttaaatttccacttaaat |
5347804 |
T |
|
| Q |
121 |
gattgagaaaaagtgatatatatgtgagatttttggacatattgaaagaagggagtggacctgttagattattcgaagatagatcgagataaagaagttg |
220 |
Q |
| |
|
||||| ||| || |||| || | |||| ||||||||||| | |||||||||||| ||||| | ||||| | || | || ||||||| |||||| |
|
|
| T |
5347805 |
gattgcgaaggagggatagatgtctgaggtttttggacatgctcaaagaagggagtaagcctgtgaagttattaaatgacaagtctagataaacaagttg |
5347904 |
T |
|
| Q |
221 |
ggtgagttttgacattgatctaggaagtgttccattgaattggcagtaagatag |
274 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
5347905 |
ggtgagttcagacattgaactaggaagtgttccattgaattggcagtgagatag |
5347958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 40 - 277
Target Start/End: Complemental strand, 5411449 - 5411212
Alignment:
| Q |
40 |
tgaaagaattgaaccctaaattgacgcttacaagattaatgaggccctcgaagtgatcagatggtaaattcccacttaaatgattgagaaaaagtgatat |
139 |
Q |
| |
|
||||| ||||||||||||||| ||| | |||||||| | || |||||||| || |||||||||| |||||| |||||||||||||| | |||| |
|
|
| T |
5411449 |
tgaaataattgaaccctaaatcaacgatgacaagatttttaagaccctcgaaatggctggatggtaaatccccactcaaatgattgagaaataaggataa |
5411350 |
T |
|
| Q |
140 |
atatgtgagatttttggacatattgaaagaagggagtggacctgttagattattcgaagatagatcgagataaagaagttgggtgagttttgacattgat |
239 |
Q |
| |
|
||||||||| || |||||||||||||| ||||||||||||||||| || ||||| ||||| | || | ||||| |||||||||||||| ||||||||| |
|
|
| T |
5411349 |
atatgtgaggttcttggacatattgaacgaagggagtggacctgtgaggttattggaagacatgtctaaataaacaagttgggtgagttctgacattgaa |
5411250 |
T |
|
| Q |
240 |
ctaggaagtgttccattgaattggcagtaagatagatc |
277 |
Q |
| |
|
| |||| ||||||||||||| ||||||||||||||| |
|
|
| T |
5411249 |
ttgggaatcgttccattgaatttgcagtaagatagatc |
5411212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 33 - 277
Target Start/End: Original strand, 5469331 - 5469575
Alignment:
| Q |
33 |
tttccgttgaaagaattgaaccctaaattgacgcttacaagattaatgaggccctcgaagtgatcagatggtaaattcccacttaaatgattgagaaaaa |
132 |
Q |
| |
|
||||| |||||||||||||||||||||| | || |||||||| | |||||||| | || |||||||||| ||| || || ||||||||||| | |
|
|
| T |
5469331 |
tttcctttgaaagaattgaaccctaaatcaatactgacaagatttttaaggccctcataatggctggatggtaaatccccgctcaagtgattgagaaata |
5469430 |
T |
|
| Q |
133 |
gtgatatatatgtgagatttttggacatattgaaagaagggagtggacctgttagattattcgaagatagatcgagataaagaagttgggtgagttttga |
232 |
Q |
| |
|
|||| ||||||||| || ||||||||||||||||||||||||| |||||| || ||||| ||||| | || ||||||| |||||||||||||| ||| |
|
|
| T |
5469431 |
aggatagatatgtgaggttcttggacatattgaaagaagggagtgtacctgtgaggttattggaagacacgtctagataaacaagttgggtgagttctga |
5469530 |
T |
|
| Q |
233 |
cattgatctaggaagtgttccattgaattggcagtaagatagatc |
277 |
Q |
| |
|
|||||| | ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
5469531 |
cattgaattgggaagtgttccattgaactggcaataagatagatc |
5469575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 5377705 - 5377446
Alignment:
| Q |
18 |
acagatgagggaacatttccgttgaaagaattgaaccctaaattgacgcttacaagattaatgaggccctcgaagtgatcagatggtaaattcccactta |
117 |
Q |
| |
|
|||||||| || |||| |||||||||||||||| || ||||||| ||| |||||||| ||||||||||| || | | ||||||||||| ||||||| |
|
|
| T |
5377705 |
acagatgatggcacatcaccgttgaaagaattgataccgaaattgatgctaacaagatttatgaggccctcaaaatagttggatggtaaatttccactta |
5377606 |
T |
|
| Q |
118 |
aatgattgagaaaaagtgatatatatgtgagatttttggacatattgaaagaagggagtggacctgttagattattcgaagatagatcgagataaagaag |
217 |
Q |
| |
|
||| ||| || || |||| ||||||||| || |||||||| | |||||||||||| ||||| | ||||| | || | || ||||||| || |
|
|
| T |
5377605 |
aataatttccaaggagggatagatatgtgaggttcttggacatgctcaaagaagggagtaagcctgtgaagttattaaatgacaagtctagataaacaat |
5377506 |
T |
|
| Q |
218 |
ttgggtgagttttgacattgatctaggaagtgttccattgaattggcagtaagatagatc |
277 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5377505 |
ttgggtgagttcagacattgaactgggaagtgttccattgaattggcagtgagatagatc |
5377446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 5400378 - 5400222
Alignment:
| Q |
20 |
agatgagggaacatttccgttgaaagaattgaaccctaaattgacgcttacaagattaatgaggccctcgaagtgatcagatggtaaattcccacttaaa |
119 |
Q |
| |
|
|||||| || ||||| ||||||||||||||||||||||| |||| ||| |||||||| ||||||||||| || || | ||||||||||| | |||||| |
|
|
| T |
5400378 |
agatgatggcacattcccgttgaaagaattgaaccctaagttgatgctaacaagatttatgaggccctcaaaatggttggatggtaaatttgcccttaaa |
5400279 |
T |
|
| Q |
120 |
tgattgagaaaaagtgatatatatgtgagatttttggacatattgaaagaagggagt |
176 |
Q |
| |
|
| ||| ||| || ||||||||| |||| || |||||||| | |||||||||||| |
|
|
| T |
5400278 |
taatttcgaaggagagatatatatatgaggttcttggacatgcttaaagaagggagt |
5400222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 5501126 - 5500966
Alignment:
| Q |
117 |
aaatgattgagaaaaagtgatatatatgtgagatttttggacatattgaaagaagggagtggacctgttagattattcgaagatagatcgagataaagaa |
216 |
Q |
| |
|
||||||||| |||| | |||| ||||||||| | || ||||||||||||||||| || | |||||| | ||||| || |||| || ||| ||| || |
|
|
| T |
5501126 |
aaatgattgtgaaataaggatagatatgtgaggtccttagacatattgaaagaaggaagggaacctgtgatgttatttgaggataagtctagaaaaacaa |
5501027 |
T |
|
| Q |
217 |
gttgggtgagttttgacattgatctaggaagtgttccattgaattggcagtaagatagatc |
277 |
Q |
| |
|
||| ||||||| ||||||||| || ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5501026 |
gtttagtgagttctgacattgaactgggaagtgttccattgaattggcagtaagagagatc |
5500966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 20327880 - 20327622
Alignment:
| Q |
18 |
acagatgagggaacatttccgttgaaagaattgaaccctaaattgacgcttacaagattaatgaggccctcgaagtgatcagatggtaaattcccactta |
117 |
Q |
| |
|
|||||||| || ||| | |||||||||||||||||||||||||||| ||| |||||||| ||||||||||| || ||| ||||||||||| || ||| |
|
|
| T |
20327880 |
acagatgatggcacactcccgttgaaagaattgaaccctaaattgatgctaacaagatttatgaggccctcaaaaagattggatggtaaatt-tcaatta |
20327782 |
T |
|
| Q |
118 |
aatgattgagaaaaagtgatatatatgtgagatttttggacatattgaaagaagggagtggacctgttagattattcgaagatagatcgagataaagaag |
217 |
Q |
| |
|
||| ||| ||| || ||||||||| |||| || |||||||| | |||||||||||| ||||| | ||||| | || | || | ||||| ||| |
|
|
| T |
20327781 |
aataatttcgaaggagggatatatatctgaggttcttggacatgcttaaagaagggagtaagcctgtgaagttattaaatgacaagtctaaataaacaag |
20327682 |
T |
|
| Q |
218 |
ttgggtgagttttgacattgatctaggaagtgttccattgaattggcagtaagatagatc |
277 |
Q |
| |
|
||||||||| | |||||||| || ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
20327681 |
ttgggtgagctcagacattgaactgggaagtgttccattgaattggcagtgagatagatc |
20327622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University