View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17101_low_8 (Length: 246)
Name: NF17101_low_8
Description: NF17101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17101_low_8 |
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| [»] scaffold0595 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 192
Target Start/End: Complemental strand, 8341824 - 8341652
Alignment:
| Q |
21 |
acttttaaaattcatttttaaataaatcccacttattcaccttaaaaaataaatatttagtggctaaacta-cttnnnnnnnn--tcaagattcttcaat |
117 |
Q |
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| T |
8341824 |
acttttaaaattcatttttaaataaacctcacttattcaccttaaaaaata--tttttagcaactagactaacttaaaaaaaaaatcaagagtctacaat |
8341727 |
T |
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| Q |
118 |
cgaataaatttaaacaagaatatataaaattaaatcaagttattgttatgatgttgctataatccatttcccatt |
192 |
Q |
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| T |
8341726 |
caaataaatttaaacaagaatatataaaattaaatcaagttattgttatgatgttgctataatccatttcccatt |
8341652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0595 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0595
Description:
Target: scaffold0595; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 6011 - 5879
Alignment:
| Q |
20 |
tacttttaaaattcatttttaaataaatcccacttattcaccttaaaaaataaatatttagtggctaaactactt--nnnnnnnntcaagattcttcaat |
117 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||||||||||| ||| |||| ||| ||||||| ||||| ||| |||| |
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| T |
6011 |
tacttttaaaattcatttttaaataaacctcacttattcaccttaaaaaatgaatttttaacaactagactacttaaaaaaaaatacaagagtctacaat |
5912 |
T |
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| Q |
118 |
cgaataaatttaaacaagaatatataaaattaa |
150 |
Q |
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| T |
5911 |
caaataaatttaaacaagaatatataaaattaa |
5879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0595; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 5699 - 5661
Alignment:
| Q |
154 |
aagttattgttatgatgttgctataatccatttcccatt |
192 |
Q |
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| T |
5699 |
aagttattgttatgatgttgctataatccatttcccatt |
5661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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