View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17101_low_9 (Length: 236)
Name: NF17101_low_9
Description: NF17101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17101_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 17594609 - 17594381
Alignment:
| Q |
1 |
ccaaagtttcaaccaaactcaaaaacaccacaaaacaacaagcatggccacttatcaaagactttttcaatctccacaaacgcttccctaccctcgccac |
100 |
Q |
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| T |
17594609 |
ccaaagtttcaaccaaactgaaaaacaccacaaaacaacaagcatggccactcatcaaagactttttcaatctccacaaacgcttccctaacctcgccac |
17594510 |
T |
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| Q |
101 |
atgttacggtatccacggatccaacggtgaggtgggatgcatacgttactgtgctggatcctccctcccatcagacggatcacaagaagtgagctggtca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17594509 |
atgttacggtatccacggatccaacggtgaggtgggatgcatacgttactgtgctggattctccctcccatcagacggatcacaagaagtgagctggtca |
17594410 |
T |
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| Q |
201 |
aaggagagattggtagccgttgatgatgt |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
17594409 |
aaggagagattggtagccgttgatgatgt |
17594381 |
T |
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