View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17102_high_11 (Length: 291)
Name: NF17102_high_11
Description: NF17102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17102_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 19089211 - 19088955
Alignment:
| Q |
13 |
aaaataaacgtgagctaaagaagatgccttttctattgaaaaatttcactcaacttttgttttgcaaaac-nnnnnnnnngtttactcaacttaattaaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19089211 |
aaaataaacgtgagctaaagaagatgtcttttctattgaaaaatttcactcaacttttgttttgcaaaacaaaaaaaaaagtttactcaacttaattaaa |
19089112 |
T |
|
| Q |
112 |
tgtgcgaaataatttctcccgcaccttgcatatattatatattatgttgtacattgtccttaccaacaaagttaagtttacggagacaaatattca-nnn |
210 |
Q |
| |
|
|||||||||||||||| || ||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
19089111 |
tgtgcgaaataatttcccctgcaccttgc-------atatattatgttatacattgtgtttaccaacaaagttaagcttacggagataaatattcatttt |
19089019 |
T |
|
| Q |
211 |
nnnnaagttggaatgaacttgatacttgaagatttacaatatttatccatgcacacggaccattt |
275 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19089018 |
ttttaagttggaatgaacttgatacttgaaga-ttacaatatttatccatgcacacggaccattt |
19088955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University