View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17102_high_14 (Length: 241)
Name: NF17102_high_14
Description: NF17102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17102_high_14 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 16837632 - 16837408
Alignment:
| Q |
17 |
cattaaagtattcttacattggctacaatatgatggaagttgaagcacatgacgaagggaatgataaagatggtaatggaaataggaaaccgcgagtcgg |
116 |
Q |
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| T |
16837632 |
cattaaagtattcttacattggctacaatatgatggaagttgaagcacatgacgaagggaatgataaagatggtaatggaaataggaaaccacgagtcgg |
16837533 |
T |
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| Q |
117 |
catgatctttgaatctcaagaatctgcagtgtcattttatagtgcatatgcaagacatgtaggatttagcatcggcttttgtcaattcaaccgtgtcggt |
216 |
Q |
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| T |
16837532 |
catgatctttgaatctaaagaatctgcagtgtcattttatagtgcatatgcaagacatgtaggatttagcatcggcttttgtcaattcaaccatgtcggt |
16837433 |
T |
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| Q |
217 |
tcaattgaattttgggacattactt |
241 |
Q |
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| T |
16837432 |
tcaattgaattttgggacattactt |
16837408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 75 - 212
Target Start/End: Complemental strand, 32216583 - 32216446
Alignment:
| Q |
75 |
gaatgataaagatggtaatggaaataggaaaccgcgagtcggcatgatctttgaatctcaagaatctgcagtgtcattttatagtgcatatgcaagacat |
174 |
Q |
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| T |
32216583 |
gaatgataaagatggtaatgtaaataggaaagcacgagtcggcatgatgtttgaatctgaagaatctgcaaagtcattttatggtgcatatgcaagacat |
32216484 |
T |
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| Q |
175 |
gtaggatttagcatcggcttttgtcaattcaaccgtgt |
212 |
Q |
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| T |
32216483 |
gttggatttagcatcgacgtttgtcaattcaaccgtgt |
32216446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 75 - 212
Target Start/End: Original strand, 32216255 - 32216392
Alignment:
| Q |
75 |
gaatgataaagatggtaatggaaataggaaaccgcgagtcggcatgatctttgaatctcaagaatctgcagtgtcattttatagtgcatatgcaagacat |
174 |
Q |
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| T |
32216255 |
gaatgataaagatggtaatggaaataggaaaccacgagttggcatgatgtttgaatctgaagaatctgcaaagtcattttatggtgcatatgcaagacat |
32216354 |
T |
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| Q |
175 |
gtaggatttagcatcggcttttgtcaattcaaccgtgt |
212 |
Q |
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| T |
32216355 |
gtaggatttagcatgtacgtttgtcaattcaactgtgt |
32216392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 32216735 - 32216674
Alignment:
| Q |
18 |
attaaagtat-tcttac-attggctacaatatgatggaagttgaagcacatgacgaagggaa |
77 |
Q |
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|||||||||| |||||| |||||||||| |||| |||||||||||||||| || |||||||| |
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| T |
32216735 |
attaaagtatatcttaccattggctacactatggtggaagttgaagcacaggatgaagggaa |
32216674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 32216105 - 32216149
Alignment:
| Q |
18 |
attaaagtattcttac-attggctacaatatgatggaagttgaag |
61 |
Q |
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| T |
32216105 |
attaaagtattctcaccattggctacactatgatggaagttgaag |
32216149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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