View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17102_low_1 (Length: 566)

Name: NF17102_low_1
Description: NF17102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17102_low_1
NF17102_low_1
[»] chr7 (2 HSPs)
chr7 (18-542)||(3597106-3597638)
chr7 (359-417)||(37358574-37358632)
[»] chr3 (1 HSPs)
chr3 (233-290)||(13363211-13363268)
[»] chr8 (3 HSPs)
chr8 (458-521)||(29512905-29512968)
chr8 (445-506)||(44140994-44141055)
chr8 (477-521)||(19649260-19649304)
[»] scaffold0009 (1 HSPs)
scaffold0009 (477-521)||(199360-199404)
[»] chr2 (2 HSPs)
chr2 (477-521)||(23377579-23377623)
chr2 (434-500)||(33019096-33019162)
[»] chr6 (2 HSPs)
chr6 (434-500)||(4910987-4911053)
chr6 (434-498)||(4908041-4908105)
[»] chr4 (2 HSPs)
chr4 (434-492)||(21691160-21691218)
chr4 (445-521)||(50061558-50061633)
[»] chr1 (3 HSPs)
chr1 (440-500)||(2099627-2099687)
chr1 (440-500)||(30557587-30557647)
chr1 (434-466)||(34875063-34875095)


Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 542
Target Start/End: Complemental strand, 3597638 - 3597106
Alignment:
Q  18 gctggaaactcaggttttgttctaatgcaagccactctattgggtgtatatatatcatttattttgtttccttcatttattatatatnnnnnnnnnnn-- 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||                 
T  3597638 gctggaaactcgggttttgttctaatgcaagccactctattgggtgtatatatatcatttattttgtttccttcattcattatatataaaaaaataaaat 3597539  T
Q  116 ------ctttattatcaccttacgaagtctaagatgaacttaattagctgttttggatgatgatttgttgtttgcttatagtatacaaatttgtaggggt 209  Q
          || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3597538 aaaaaactatattatcaccttacgaagtctaagatgaacttaatttgctgttttggatgatgatttgttgtttgcttatagtatacgaatttgtaggggt 3597439  T
Q  210 acttcctcactccctctggatagttacaagttaatcaatgtgtgattgttggataagcgcaagatcaagtactatatcagtgaggtatgtgttttagaga 309  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3597438 acttcctcactccctctggatagttacaagttaaccaatgtgtgattttcggataagcgcaagatcaagtactatatcagtgaggtatgtgttttagaga 3597339  T
Q  310 tggcttttttggtttgtaatgcctgaactttgattttgctattaatggtcatagcatgttcgactggttttgtgttgctatctttggaatgtaaatcgta 409  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  3597338 tggctattttggtttgtaatgcctgaactttgattttgttattaatggtcatagcatgttcaactggttttgtgttgctatctttggaatgtaaatcata 3597239  T
Q  410 taatataatgtttttaagaatcaattttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccaccgt 509  Q
    ||||||||||||||||| |||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3597238 taatataatgtttttaaaaatcaattttgcatgaatgtatctaaagacaaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccaccgt 3597139  T
Q  510 acaaccaaacacgcacgcaaataggttctggta 542  Q
    |||||||||||||||||||||||||||||||||    
T  3597138 acaaccaaacacgcacgcaaataggttctggta 3597106  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 417
Target Start/End: Complemental strand, 37358632 - 37358574
Alignment:
Q  359 catagcatgttcgactggttttgtgttgctatctttggaatgtaaatcgtataatataa 417  Q
    ||||||| ||||  ||||||||||||||||||| ||| |||||||||  ||||||||||    
T  37358632 catagcaggttcagctggttttgtgttgctatcgttgtaatgtaaattatataatataa 37358574  T

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Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 13363268 - 13363211
Alignment:
Q  233 ttacaagttaatcaatgtgtgattgttggataagcgcaagatcaagtactatatcagt 290  Q
    ||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||    
T  13363268 ttacaagttaaccaatatgtgattgttggataagcccaagatcaagtactatatcagt 13363211  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 458 - 521
Target Start/End: Original strand, 29512905 - 29512968
Alignment:
Q  458 aaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 521  Q
    |||||| || |||| ||||||||||||||||||||| |||||| | ||||| ||||||||||||    
T  29512905 aaatcagttttagtcaaaatcacttttaaccaaaatcaattctccacaccgcacaaccaaacac 29512968  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 506
Target Start/End: Complemental strand, 44141055 - 44140994
Alignment:
Q  445 tttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccac 506  Q
    |||||||||| | || |||||| |||| | ||||||||||||||||||| |||||| |||||    
T  44141055 tttatccaaacacaattcacttttagtcagaatcacttttaaccaaaatcaattctccccac 44140994  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 521
Target Start/End: Original strand, 19649260 - 19649304
Alignment:
Q  477 tcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 521  Q
    ||||||||||||||||| |||| || |||||| ||||||||||||    
T  19649260 tcacttttaaccaaaatcaattttttccaccgcacaaccaaacac 19649304  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 477 - 521
Target Start/End: Complemental strand, 199404 - 199360
Alignment:
Q  477 tcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 521  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||    
T  199404 tcacttttaaccaaaatcaattctttccaccgcacaaccaaacac 199360  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 477 - 521
Target Start/End: Original strand, 23377579 - 23377623
Alignment:
Q  477 tcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 521  Q
    |||||||||||||||||||||| || |||||| ||||||||||||    
T  23377579 tcacttttaaccaaaattaattttttccaccgcacaaccaaacac 23377623  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 500
Target Start/End: Complemental strand, 33019162 - 33019096
Alignment:
Q  434 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 500  Q
    |||| |||||||  ||||||| | ||||||||| |||| | ||||||||||||||||||| ||||||    
T  33019162 ttttacatgaatgcatccaaacacaaatcacttttagtcagaatcacttttaaccaaaatcaattct 33019096  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 500
Target Start/End: Original strand, 4910987 - 4911053
Alignment:
Q  434 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 500  Q
    |||| ||| ||| |||||||| | ||||||||| |||| | ||| ||||||||||||||||||||||    
T  4910987 ttttacataaatgtatccaaacataaatcacttttagtcagaattacttttaaccaaaattaattct 4911053  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 498
Target Start/End: Original strand, 4908041 - 4908105
Alignment:
Q  434 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaatt 498  Q
    |||| ||||| |||||||||| | ||||||||| |||  | ||||||||||||||||||| ||||    
T  4908041 ttttacatgattttatccaaacacaaatcacttttaggaagaatcacttttaaccaaaatcaatt 4908105  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 492
Target Start/End: Complemental strand, 21691218 - 21691160
Alignment:
Q  434 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaa 492  Q
    |||| ||||||| |||||||| | ||||||||| |||| | ||||||||||||||||||    
T  21691218 ttttacatgaatatatccaaacacaaatcacttgtagtcagaatcacttttaaccaaaa 21691160  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 521
Target Start/End: Complemental strand, 50061633 - 50061558
Alignment:
Q  445 tttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 521  Q
    |||||||||| | || |||||| |||| | ||||||||||||||||||| |||||| ||||| | || |||||||||    
T  50061633 tttatccaaacacaattcactt-tagtcagaatcacttttaaccaaaatcaattctccccactgaactaccaaacac 50061558  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 500
Target Start/End: Complemental strand, 2099687 - 2099627
Alignment:
Q  440 atgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 500  Q
    |||||| |||||||| | ||||||||| || | ||||| ||||||||||||||| ||||||    
T  2099687 atgaatgtatccaaacacaaatcacttttactcaaaattacttttaaccaaaatcaattct 2099627  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 500
Target Start/End: Original strand, 30557587 - 30557647
Alignment:
Q  440 atgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 500  Q
    |||||| |||||||| | ||||||||| |||| | | ||||||||||||||||| ||||||    
T  30557587 atgaatgtatccaaacacaaatcacttctagtcagagtcacttttaaccaaaatcaattct 30557647  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 466
Target Start/End: Complemental strand, 34875095 - 34875063
Alignment:
Q  434 ttttgcatgaatttatccaaagaaaaatcactt 466  Q
    ||||||||||||||||||||||| |||||||||    
T  34875095 ttttgcatgaatttatccaaagataaatcactt 34875063  T

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