View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17102_low_10 (Length: 303)
Name: NF17102_low_10
Description: NF17102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17102_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 286
Target Start/End: Complemental strand, 29286899 - 29286615
Alignment:
| Q |
10 |
atgaacaaaagagataaaagagattcccatccaatccatcaccttactccagattgccattgacatctcaatgtgtnnnnnnnntggttggtagattcct |
109 |
Q |
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| T |
29286899 |
atgaacaaaagagataaaagagattcccatccaatccatcaccttactccagattgccattgacatctcaatgtgtaaaaaaaatggttggtagattcct |
29286800 |
T |
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| Q |
110 |
cacacctattgcacaacacacacaaactcgatgcctctgttggtaagatgttacgtcttgcaaggttcaatctcataggaatttggtctaaaagaagct- |
208 |
Q |
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|| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29286799 |
caaacctattgcacaacacacacaaactcgatgcctcttttggtatgatgttacgtcttgcaaggttcaatctcgtaggaatttggtctaaaagaagctt |
29286700 |
T |
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| Q |
209 |
---------ggtcaccacctttgatggtgccggactcctccaaatatttccaaacactctttgttcctcttggtttcggttcccctc |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29286699 |
ccacgaaaaggtcaccacctttgatggtgccggactcctccaaatatttccaaaca--ctttgttcctcttggtttcggttcccctc |
29286615 |
T |
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