View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17102_low_16 (Length: 229)

Name: NF17102_low_16
Description: NF17102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17102_low_16
NF17102_low_16
[»] chr3 (3 HSPs)
chr3 (140-210)||(42517212-42517282)
chr3 (140-210)||(1238636-1238706)
chr3 (1-61)||(42517386-42517446)
[»] chr5 (1 HSPs)
chr5 (140-210)||(41971142-41971212)


Alignment Details
Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 42517282 - 42517212
Alignment:
Q  140 agctctatttaattagagcaccttttgatattttccgtagtttctcatatggacttattggaagtaaaaat 210  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42517282 agctctatttaattagagcaccttttgatatttttcgtagtttctcatatggacttattggaagtaaaaat 42517212  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 1238706 - 1238636
Alignment:
Q  140 agctctatttaattagagcaccttttgatattttccgtagtttctcatatggacttattggaagtaaaaat 210  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||    
T  1238706 agctctatttaattagagcaccttttgatatttttcgtagtttctcatatagacttattgaaagtaaaaat 1238636  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 42517446 - 42517386
Alignment:
Q  1 ttattggaagaagtttgtcaaaccgacagacgaccataacagtggcagtggacaagcctag 61  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  42517446 ttattggaagaagtttgtgaaaccgacagacgaccataacagtggcggtggacaagcctag 42517386  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 41971212 - 41971142
Alignment:
Q  140 agctctatttaattagagcaccttttgatattttccgtagtttctcatatggacttattggaagtaaaaat 210  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||    
T  41971212 agctctatttaattagagcaccttttgatatttttcgtagtttctcatatagacttattgaaagtaaaaat 41971142  T

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