View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17102_low_17 (Length: 228)
Name: NF17102_low_17
Description: NF17102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17102_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 53884986 - 53884793
Alignment:
| Q |
18 |
cagcatatgcctctttggaatgaaatggaatccgtgaattaatttggtttgaagataaaaaagaaagataacgacgataaatataaacaatacccccaac |
117 |
Q |
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| T |
53884986 |
cagcatatgcccctttggaatgaaatggaatccgtgaattaatttggtttgaagataaaaa-gaaagataacgacgataaatataaacaatacccccaac |
53884888 |
T |
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| Q |
118 |
ccaaacaaaca----tagatttattataaacccgtggaccgtacccgccgctagatttgtaaccaactacaactacgcgtatcccgacccttccttcat |
212 |
Q |
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| T |
53884887 |
ccaaacaaacaaacatagatttattataaacccgtggaccgtacccgccgctagatttgt----aactacatctacgcgtatcccgacccttccttcat |
53884793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 53891100 - 53890907
Alignment:
| Q |
18 |
cagcatatgcctctttggaatgaaatggaatccgtgaattaatttggtttgaagataaaaaagaaagataacgacgataaatataaacaatacccccaac |
117 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
53891100 |
cagcatatgcccctttggaatgaaatggaatccgtgaattaatttggtttgaagataaaaa-gaaagataacgacgataaatataaacaatacccccaac |
53891002 |
T |
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| Q |
118 |
ccaaacaaaca----tagatttattataaacccgtggaccgtacccgccgctagatttgtaaccaactacaactacgcgtatcccgacccttccttcat |
212 |
Q |
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| T |
53891001 |
ccaaacaaacaaacatagatttattataaacccgtggaccgtacccgccgctagatttgt----aactacatctacgcgtatcccgacccttccttcat |
53890907 |
T |
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