View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17102_low_3 (Length: 453)
Name: NF17102_low_3
Description: NF17102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17102_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 15 - 439
Target Start/End: Original strand, 12861331 - 12861755
Alignment:
| Q |
15 |
gatatgaaaactttcgcacttaccatgtctacattcatgaaagccaaatcaacttcgaagtcaccgttaccgccactgcttccgtcgtaacaaactggct |
114 |
Q |
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| T |
12861331 |
gatatgaaaaccttcgcacttaccatgtctacattcacgaaagccaaatcaacttcgaagtcaccgttaccgccactgcttccgttgtaacaaactggct |
12861430 |
T |
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| Q |
115 |
ccgtacaatgctcgatcatcaccttcaatacctccgcaactgtaatcttgttgtcggcctcggcgttcaatggactaaccgcaaccttgatcctcccgcc |
214 |
Q |
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| T |
12861431 |
ccgtactatgctcgatcatcaccttcaatacctccgcaactgtaatcttgttgtcggcctcggcgttcaatggactaaccgcaaccttgatcctcccgcc |
12861530 |
T |
|
| Q |
215 |
gacacgctacagttatgcatcggtggcagctgtcttatcttccacctctctcgcgcagatatgattccggtcagtctctgcaattttctccgtcatccta |
314 |
Q |
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| T |
12861531 |
gacacgctacagttatgcatcggtggcagctgtcttatcttccacctctctcgcgcagatatgattccggtcagtctctgcaattttctccgtcatccta |
12861630 |
T |
|
| Q |
315 |
agaacaccttcgttggattctggaacgctgcagatcgtaggaagctggagagatttgatcatcgcttgcaaatgtggaaaaatcctcaggatctgaggaa |
414 |
Q |
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| T |
12861631 |
agaacaccttcgttggattctggaacgctgcagatcgtaggaagctggagagatttgatcatcgcttgcaaatgtggaaaaatcctcaggatttgaggaa |
12861730 |
T |
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| Q |
415 |
ttacgagttcaatggtgaagctctt |
439 |
Q |
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| T |
12861731 |
ttacgagttcaatggtgaagctctt |
12861755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 156 - 433
Target Start/End: Complemental strand, 12844009 - 12843732
Alignment:
| Q |
156 |
gtaatcttgttgtcggcctcggcgttcaatggactaaccgcaaccttgatcctcccgccgacacgctacagttatgcatcggtggcagctgtcttatctt |
255 |
Q |
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||||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12844009 |
gtaatctcattgtcggccttggcgttcaatggactcccggcaaccttgatcctcccgccgacacgctacagttatgcatcagtggcagctgtcttatctt |
12843910 |
T |
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| Q |
256 |
ccacctctctcgcgcagatatgattccggtcagtctctgcaattttctccgtcatcctaagaacaccttcgttggattctggaacgctgcagatcgtagg |
355 |
Q |
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| T |
12843909 |
ccacctctctctcgccgatatgattccggttagtctctgcaactttctccgtcatcctaagaacaccttcgttggattctggaacgctgctgatcgtaga |
12843810 |
T |
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| Q |
356 |
aagctggagagatttgatcatcgcttgcaaatgtggaaaaatcctcaggatctgaggaattacgagttcaatggtgaa |
433 |
Q |
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| T |
12843809 |
aggctggagagatttgatcatcgcttgcaaatgtggaaagatcctcaggatctgaggcattacaggttcaatggtgaa |
12843732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 12844186 - 12844050
Alignment:
| Q |
15 |
gatatgaaaactttcgcacttaccatgtctacattcatgaaagccaaatcaacttcgaagtcaccgttaccgccactgcttccgtcgtaacaaactggct |
114 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12844186 |
gatatgaaaaccttcgcacttaccatgtctacattcatgaaagccaaatcaacttcgaagtcaccgttaccgccacagcttccgtcgtaacaaactggct |
12844087 |
T |
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| Q |
115 |
ccgtacaatgctcgatcatcaccttcaatacctccgc |
151 |
Q |
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| T |
12844086 |
ccaaagtatgctcaatcatcattttcaatccctccgc |
12844050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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