View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17102_low_4 (Length: 413)

Name: NF17102_low_4
Description: NF17102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17102_low_4
NF17102_low_4
[»] chr5 (4 HSPs)
chr5 (117-400)||(29610321-29610615)
chr5 (218-400)||(29584408-29584590)
chr5 (19-82)||(29610611-29610674)
chr5 (19-67)||(29584021-29584069)
[»] chr3 (1 HSPs)
chr3 (230-299)||(25129001-25129070)
[»] chr7 (3 HSPs)
chr7 (131-163)||(29363627-29363659)
chr7 (131-163)||(43854960-43854992)
chr7 (131-163)||(46281061-46281093)
[»] chr6 (2 HSPs)
chr6 (132-168)||(4163273-4163309)
chr6 (132-168)||(4224894-4224930)
[»] chr4 (1 HSPs)
chr4 (132-168)||(46714905-46714941)
[»] chr2 (3 HSPs)
chr2 (131-163)||(2790357-2790389)
chr2 (131-163)||(33503117-33503149)
chr2 (131-163)||(43259954-43259986)
[»] chr1 (1 HSPs)
chr1 (131-163)||(51957315-51957347)


Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 117 - 400
Target Start/End: Complemental strand, 29610615 - 29610321
Alignment:
Q  117 ccacaagagatatgtagtagataagttcaaataagccaatacaaacatgcctttgtcgatagctaaattcggaaagatgcaaattaaaggttaaaat--- 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  29610615 ccacaagagatatgtagtagataagttcaaataagccaatacaaacatgcctttgtcgatagctaaattcggaaagatgcaaattaaaggttaaaataaa 29610516  T
Q  214 --------gaagaggaacagcacgaacctagttgctccaaggccaacgttgtgaggaaatatagtagtaccatagacgttgttgttaccatgaatagcat 305  Q
            ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29610515 aaagataagaagaggaacagcacgaacctagttgctccaaggccaacattatgaggaaatatagtagtaccatagacgttattgttaccatgaatagcat 29610416  T
Q  306 cagtacaataaatgattggtatgcctaaccgtgactcaagtgccagcttctgaaacccgtccaccatatcagcccaatcagaagacacttccttc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29610415 cagtacaataaatgattggtatgcctaaccgtgactcaagtgccagcttctgaaacccgtccaccatatcagcccaatcagaagacacttccttc 29610321  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 218 - 400
Target Start/End: Original strand, 29584408 - 29584590
Alignment:
Q  218 aggaacagcacgaacctagttgctccaaggccaacgttgtgaggaaatatagtagtaccatagacgttgttgttaccatgaatagcatcagtacaataaa 317  Q
    ||||||| ||| ||||| || ||||| ||| |||| |||||||||||||| || ||||| ||||| || || |||||||||| |||||| || | ||| |    
T  29584408 aggaacaccaccaaccttgtagctccgagggcaacattgtgaggaaatatggtcgtaccgtagacattattattaccatgaacagcatcggtcccatata 29584507  T
Q  318 tgattggtatgcctaaccgtgactcaagtgccagcttctgaaacccgtccaccatatcagcccaatcagaagacacttccttc 400  Q
    ||||||||||||||||||| || ||||| |||| ||||||||||||||| |||| ||||||||||||||| || |||||||||    
T  29584508 tgattggtatgcctaaccgcgattcaagggccaacttctgaaacccgtctaccaaatcagcccaatcagatgatacttccttc 29584590  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 29610674 - 29610611
Alignment:
Q  19 caagtgacgttgcagctgcaattttttgaactaaatctgcatctctacaagcatacacaccaca 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29610674 caagtgacgttgcagctgcaattttttgaactaaatctgcatctctacaagcatacacaccaca 29610611  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 29584021 - 29584069
Alignment:
Q  19 caagtgacgttgcagctgcaattttttgaactaaatctgcatctctaca 67  Q
    |||||||  |||||||| ||||| |||||||||||||||||||||||||    
T  29584021 caagtgatattgcagctccaattctttgaactaaatctgcatctctaca 29584069  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 25129001 - 25129070
Alignment:
Q  230 aacctagttgctccaaggccaacgttgtgaggaaatatagtagtaccatagacgttgttgttaccatgaa 299  Q
    |||||||| |||||||||||||| |||||||||||||| |||| |||||||||  | || ||||||||||    
T  25129001 aacctagtagctccaaggccaacattgtgaggaaatatggtagcaccatagacactattattaccatgaa 25129070  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 29363627 - 29363659
Alignment:
Q  131 tagtagataagttcaaataagccaatacaaaca 163  Q
    |||||||||||||||||||||||||| ||||||    
T  29363627 tagtagataagttcaaataagccaatccaaaca 29363659  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 43854992 - 43854960
Alignment:
Q  131 tagtagataagttcaaataagccaatacaaaca 163  Q
    |||||||||||||||||||||||||| ||||||    
T  43854992 tagtagataagttcaaataagccaattcaaaca 43854960  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 46281093 - 46281061
Alignment:
Q  131 tagtagataagttcaaataagccaatacaaaca 163  Q
    |||||||||||||||||||||||||| ||||||    
T  46281093 tagtagataagttcaaataagccaatccaaaca 46281061  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 4163273 - 4163309
Alignment:
Q  132 agtagataagttcaaataagccaatacaaacatgcct 168  Q
    |||||||||| |||||||||||||| |||||||||||    
T  4163273 agtagataagctcaaataagccaatccaaacatgcct 4163309  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 4224894 - 4224930
Alignment:
Q  132 agtagataagttcaaataagccaatacaaacatgcct 168  Q
    |||||||||| |||||||||||||| |||||||||||    
T  4224894 agtagataagctcaaataagccaatccaaacatgcct 4224930  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 46714941 - 46714905
Alignment:
Q  132 agtagataagttcaaataagccaatacaaacatgcct 168  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  46714941 agtagataagttcaaataagccaattcaaacaggcct 46714905  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 2790357 - 2790389
Alignment:
Q  131 tagtagataagttcaaataagccaatacaaaca 163  Q
    |||||||||||||||||||||||||| ||||||    
T  2790357 tagtagataagttcaaataagccaatccaaaca 2790389  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 33503117 - 33503149
Alignment:
Q  131 tagtagataagttcaaataagccaatacaaaca 163  Q
    ||||||||||| |||||||||||||||||||||    
T  33503117 tagtagataagctcaaataagccaatacaaaca 33503149  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 43259954 - 43259986
Alignment:
Q  131 tagtagataagttcaaataagccaatacaaaca 163  Q
    |||||||||||||||||||||||||| ||||||    
T  43259954 tagtagataagttcaaataagccaatccaaaca 43259986  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 51957347 - 51957315
Alignment:
Q  131 tagtagataagttcaaataagccaatacaaaca 163  Q
    |||||||||||||||||||||| ||||||||||    
T  51957347 tagtagataagttcaaataagctaatacaaaca 51957315  T

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