View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17102_low_5 (Length: 410)

Name: NF17102_low_5
Description: NF17102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17102_low_5
NF17102_low_5
[»] chr4 (2 HSPs)
chr4 (18-404)||(53884601-53884986)
chr4 (18-404)||(53890715-53891100)


Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 53884986 - 53884601
Alignment:
Q  18 cagcatatgcctctttggaatgaaatggaatccgtgaattaatttggtttgaagataaaaaagaaagataacgacgataaatataaacaatacccccaac 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  53884986 cagcatatgcccctttggaatgaaatggaatccgtgaattaatttggtttgaagataaaaa-gaaagataacgacgataaatataaacaatacccccaac 53884888  T
Q  118 ccaaacaaaca----tagatttattataaacccgtggaccgtacccgccgctagatttgtaaccaactacaactacgcgtatcccgacccttccttcatt 213  Q
    |||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||    |||| ||||||||||||||||||||||||||||    
T  53884887 ccaaacaaacaaacatagatttattataaacccgtggaccgtacccgccgctagatttgtaac----tacatctacgcgtatcccgacccttccttcatt 53884792  T
Q  214 tcttctctattccttcctatttggttaattcctattccaagcttctgttattattgccaccattttttcaaaccttcaatttcaaccacgaccatgcctc 313  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53884791 tcttctatattccttcctatttgtttaattcctattccaagcttctgttattattgccaccattttttcaaaccttcaatttcaaccacgaccatgcctc 53884692  T
Q  314 ctcatcatcaccatggcgatcctgaacaaccaaaatcaaaccctaatctcctctccctattcctcaaacccatcatcatgcttcatctcac 404  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  53884691 ctcatcatcaccatggcgatcctgaacaaccaaaaccaaaccctaatctcctctccctattcctcaaacccatcatcatgcttcttctcac 53884601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 53891100 - 53890715
Alignment:
Q  18 cagcatatgcctctttggaatgaaatggaatccgtgaattaatttggtttgaagataaaaaagaaagataacgacgataaatataaacaatacccccaac 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  53891100 cagcatatgcccctttggaatgaaatggaatccgtgaattaatttggtttgaagataaaaa-gaaagataacgacgataaatataaacaatacccccaac 53891002  T
Q  118 ccaaacaaaca----tagatttattataaacccgtggaccgtacccgccgctagatttgtaaccaactacaactacgcgtatcccgacccttccttcatt 213  Q
    |||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||    |||| ||||||||||||||||||||||||||||    
T  53891001 ccaaacaaacaaacatagatttattataaacccgtggaccgtacccgccgctagatttgtaac----tacatctacgcgtatcccgacccttccttcatt 53890906  T
Q  214 tcttctctattccttcctatttggttaattcctattccaagcttctgttattattgccaccattttttcaaaccttcaatttcaaccacgaccatgcctc 313  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53890905 tcttctatattccttcctatttgtttaattcctattccaagcttctgttattattgccaccattttttcaaaccttcaatttcaaccacgaccatgcctc 53890806  T
Q  314 ctcatcatcaccatggcgatcctgaacaaccaaaatcaaaccctaatctcctctccctattcctcaaacccatcatcatgcttcatctcac 404  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  53890805 ctcatcatcaccatggcgatcctgaacaaccaaaaccaaaccctaatctcctctccctattcctcaaacccatcatcatgcttcttctcac 53890715  T

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