View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17102_low_9 (Length: 310)
Name: NF17102_low_9
Description: NF17102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17102_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 743097 - 742791
Alignment:
| Q |
1 |
tctctacaggaggctgagaggcggcatgatatagaaagagctgcaagtctacgatatgg-----------------aagatgcaattcagctgcttgatg |
83 |
Q |
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| T |
743097 |
tctctacaggaggctgagaggcggcatgatatagaaagagctgcaagtctacgatatggtgcgattgatgacgtggaagatgcaattcagctgcttg--g |
743000 |
T |
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| Q |
84 |
agatagcactgatgagatgagagcttaatgttgacagaaactgctg-----gagtacaaaacctaattgctatggttgttagcctattgaccggcatacc |
178 |
Q |
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| T |
742999 |
agatagcactgatgaga-----gcttaatgttgacagaaactgctgtgctggagtacaaaacctaattgctatggttgttagcctattgaccggcatacc |
742905 |
T |
|
| Q |
179 |
agtgacccaaattggcgaaaatgagaaagaaaggtttcttggaattggtgacaggttgcacaatagagttgtgggacaagatcaagcagtaaatgacgtt |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
742904 |
agtgacccaaattggcgaaaatgagaaagaaaggtttcttggaattggtgacaggttgcataatagagttgtgggacaagatcaagcagtaaatgacgtt |
742805 |
T |
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| Q |
279 |
gctaacgctgtatt |
292 |
Q |
| |
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| T |
742804 |
gctaacgctgtatt |
742791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 151 - 292
Target Start/End: Complemental strand, 42450188 - 42450047
Alignment:
| Q |
151 |
tggttgttagcctattgaccggcataccagtgacccaaattggcgaaaatgagaaagaaaggtttcttggaattggtgacaggttgcacaatagagttgt |
250 |
Q |
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| T |
42450188 |
tggttgttagcctattgacgggtataccagtgtcccgacttagtgaaaatgagaaagaaaggtttcttggacttggtgacaggttacacaaaagagtagt |
42450089 |
T |
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| Q |
251 |
gggacaagatcaagcagtaaatgacgttgctaacgctgtatt |
292 |
Q |
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| T |
42450088 |
gggacaagatcatgcagtaaatgccgttgctaacactgtatt |
42450047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 42450345 - 42450287
Alignment:
| Q |
1 |
tctctacaggaggctgagaggcggcatgatatagaaagagctgcaagtctacgatatgg |
59 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| |
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| T |
42450345 |
tctctacaggaggctgagaggcggaatgatatagcaagagctgcaagcctacgatatgg |
42450287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 268
Target Start/End: Original strand, 10045838 - 10045963
Alignment:
| Q |
143 |
aattgctatggttgttagcctattgaccggcataccagtgacccaaattggcgaaaatgagaaagaaaggtttcttggaattggtgacaggttgcacaat |
242 |
Q |
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||||||| ||||||||||| || |||||| ||||||||||| | | ||| ||||||| ||||||||||| ||||| |||| ||||| ||||| | | |
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| T |
10045838 |
aattgctgaggttgttagccgatggaccggtataccagtgactcgtttaggccaaaatgataaagaaaggttggttggacttggagacagattgcatact |
10045937 |
T |
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| Q |
243 |
agagttgtgggacaagatcaagcagt |
268 |
Q |
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||||||||||||||||| |||||||| |
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| T |
10045938 |
agagttgtgggacaagaccaagcagt |
10045963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 38707683 - 38707755
Alignment:
| Q |
196 |
aaaatgagaaagaaaggtttcttggaattggtgacaggttgcacaatagagttgtgggacaagatcaagcagt |
268 |
Q |
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||||||| ||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||| |||||||| |
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| T |
38707683 |
aaaatgataaagaaaggttggttggacttggtgacaaattgcacagtagagttgtgggacaagaccaagcagt |
38707755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 292
Target Start/End: Original strand, 45467744 - 45467840
Alignment:
| Q |
196 |
aaaatgagaaagaaaggtttcttggaattggtgacaggttgcacaatagagttgtgggacaagatcaagcagtaaatgacgttgctaacgctgtatt |
292 |
Q |
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|||||||||||| |||||| ||||| |||||||||| |||||| |||||| ||||||||||| ||||| || |||| |||||| | |||||||| |
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| T |
45467744 |
aaaatgagaaagcaaggttggttggacttggtgacagactgcacactagagtcgtgggacaagaccaagcggttaatgctgttgctgaggctgtatt |
45467840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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