View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17103_high_3 (Length: 375)
Name: NF17103_high_3
Description: NF17103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17103_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 26454376 - 26454036
Alignment:
| Q |
19 |
acttgaaactgagctttatgtaacgatggccaataatcagtaagtttggtatgtattccattgagctggtaaaataaataaa-taaaa------tgttaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
26454376 |
acttgaaactgagctttatgtaacgatggccaataatcagtaagtttggtatgtattccattgagctggtaaaataaataaaataaaaaaagaatgttaa |
26454277 |
T |
|
| Q |
112 |
gttatttcattgatgcttacttacatgtcataaaattaaatatagcttacatgttcagtagatggcgcgtgataatgcttgtcgcaatcttttaattcat |
211 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26454276 |
gttattccattgatgcttacttacatgtcataaaattaaatatagcttacatgttcagtagatggcgcgtgataatgcttgtcgcaatcttttaattcat |
26454177 |
T |
|
| Q |
212 |
cgctacccttcttcgcaggccataacccgtgaattataaacctgttaatggttggccagtcatgaaaacaattattcgcaggatctttacagaacgtggg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26454176 |
cgctacccttcttcgcaggccataacccgtgaattataaacctgttaatggttggccagtcatgaaaacaattattcgcaggatctttacagaacgtggg |
26454077 |
T |
|
| Q |
312 |
tggccaagtttccaccagcttgaaatggtcgaaggttagat |
352 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
26454076 |
tggccaagtttccgccagcttgaaatggtcgaaggtgagat |
26454036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 262 - 343
Target Start/End: Original strand, 26539615 - 26539696
Alignment:
| Q |
262 |
gttggccagtcatgaaaacaattattcgcaggatctttacagaacgtgggtggccaagtttccaccagcttgaaatggtcga |
343 |
Q |
| |
|
|||||||| | || || |||||||||| ||||||||||||| || ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26539615 |
gttggccaatgatcaacacaattattctcaggatctttacaaaatgtgggtggccaagtttcatccagcttgaaatggtcga |
26539696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University