View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17103_high_7 (Length: 251)
Name: NF17103_high_7
Description: NF17103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17103_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 26454003 - 26453764
Alignment:
| Q |
1 |
tgaggatgtcgcggaggctttttcctaccttttcttacatcaggttcctctaagggttttgcaattggttcctctaaggttgatgggaggaattgtgttg |
100 |
Q |
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| T |
26454003 |
tgaggatgtcgtggaggctttttcctaccttttcttacatcaggttcctctaagggttttgcaattggttcctctaaggttgatgggaggaattgtgttg |
26453904 |
T |
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| Q |
101 |
gagattgtagaaaaggctttgcaattgaagccttacatnnnnnnnttgctatagcaaaaaagatacaaataatgagatgattcatcttcattttgttttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26453903 |
gagattgtagaaaaggctttgcaattgaagccttacataaaaaaattgctatagcaaaaaagatacaaataatgagatgattcatcttcattttattttg |
26453804 |
T |
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| Q |
201 |
aaaattgaacttatcaatggcttatgttgatgctagtatt |
240 |
Q |
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| T |
26453803 |
aaaattgaacttatcaatgacttatgttgatgctagtatt |
26453764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 26504193 - 26504005
Alignment:
| Q |
67 |
ggttcctctaaggttgatgggaggaattgtgttggagattgtagaaaaggctttgcaattgaagcct------------tacatnnnnnnnttgctatag |
154 |
Q |
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| T |
26504193 |
ggttcctccaaggctgatgggaggaattgtgttggagatggtagaaaaggctttgcaattgaagcatcctcagcagcattacataaaaaaattgttatag |
26504094 |
T |
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| Q |
155 |
caaaaaagatacaaataatgagatgattcatcttcattttgttttgaaaattgaac---ttatcaatggcttatgttgatgctagtatt |
240 |
Q |
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| T |
26504093 |
caaaaaagatacaaataatgagatgattcatcttcattttgttttgaaaattgaacttattatcaatggcttatgttgatgttagtatt |
26504005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 26521658 - 26521752
Alignment:
| Q |
146 |
ttgctatagcaaaaaagatacaaataatgagatgattcatcttcattttgttttgaaaattgaacttatcaatggcttatgttgatgctagtatt |
240 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| |
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| T |
26521658 |
ttgctatagcaaaaaagatacatataatgagatgattcatcttcattttgttttaaaaattgaacttatcaatggcttatattgatgttagtatt |
26521752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 26521647 - 26521576
Alignment:
| Q |
169 |
ataatgagatgattcatcttcattttgttttgaaaattgaacttatcaatggcttatgttgatgctagtatt |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
26521647 |
ataatgagatgattcatcttcattttgttttgaaaattgaacttatcaatggcttatattaatgctagtatt |
26521576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 26504223 - 26504181
Alignment:
| Q |
13 |
ggaggctttttcctaccttttcttacatcaggttcctctaagg |
55 |
Q |
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| T |
26504223 |
ggaggctttttcctaccttttctcacatcaggttcctccaagg |
26504181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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