View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17103_low_1 (Length: 494)

Name: NF17103_low_1
Description: NF17103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17103_low_1
NF17103_low_1
[»] chr4 (27 HSPs)
chr4 (52-478)||(31205626-31206065)
chr4 (50-214)||(31204591-31204755)
chr4 (50-213)||(54823173-54823336)
chr4 (57-213)||(21569288-21569444)
chr4 (49-213)||(54822416-54822580)
chr4 (66-214)||(21570354-21570502)
chr4 (55-206)||(42713508-42713658)
chr4 (53-155)||(20944372-20944474)
chr4 (96-214)||(44218989-44219107)
chr4 (62-210)||(5417345-5417492)
chr4 (62-209)||(47243918-47244064)
chr4 (53-150)||(20945395-20945492)
chr4 (62-173)||(5418157-5418268)
chr4 (62-209)||(47573572-47573718)
chr4 (62-207)||(47572630-47572774)
chr4 (62-209)||(50497900-50498046)
chr4 (53-147)||(46425919-46426013)
chr4 (53-210)||(49923683-49923840)
chr4 (53-210)||(54372787-54372944)
chr4 (112-197)||(42698638-42698723)
chr4 (62-207)||(43709802-43709946)
chr4 (62-147)||(48413491-48413576)
chr4 (53-153)||(17521912-17522012)
chr4 (53-207)||(37642458-37642613)
chr4 (62-174)||(47243028-47243140)
chr4 (95-173)||(50497072-50497150)
chr4 (57-105)||(44217994-44218042)
[»] chr5 (18 HSPs)
chr5 (52-214)||(5163697-5163859)
chr5 (50-213)||(8358206-8358369)
chr5 (50-214)||(8359329-8359493)
chr5 (51-214)||(38603666-38603829)
chr5 (56-214)||(42962060-42962218)
chr5 (51-201)||(38602712-38602863)
chr5 (109-212)||(39050727-39050830)
chr5 (51-245)||(39051589-39051781)
chr5 (87-212)||(42963167-42963292)
chr5 (98-214)||(301397-301513)
chr5 (62-210)||(11907089-11907236)
chr5 (62-201)||(4904254-4904391)
chr5 (62-210)||(14357809-14357957)
chr5 (62-210)||(39134708-39134855)
chr5 (62-206)||(39135576-39135719)
chr5 (53-207)||(30916036-30916190)
chr5 (55-119)||(1011977-1012041)
chr5 (53-153)||(30674748-30674848)
[»] chr3 (25 HSPs)
chr3 (49-244)||(50003137-50003331)
chr3 (50-211)||(50002453-50002614)
chr3 (50-214)||(21248172-21248336)
chr3 (52-212)||(21247275-21247435)
chr3 (50-202)||(55387561-55387713)
chr3 (62-244)||(27226466-27226647)
chr3 (57-174)||(5409415-5409532)
chr3 (50-214)||(27225470-27225634)
chr3 (53-173)||(46688484-46688603)
chr3 (57-212)||(5384460-5384615)
chr3 (97-206)||(39530840-39530948)
chr3 (62-210)||(45730678-45730825)
chr3 (62-173)||(39531744-39531855)
chr3 (62-210)||(32999838-32999985)
chr3 (57-201)||(50765697-50765840)
chr3 (62-173)||(2088919-2089030)
chr3 (53-155)||(2764004-2764106)
chr3 (65-210)||(14206711-14206855)
chr3 (65-210)||(14214459-14214603)
chr3 (53-206)||(46690212-46690365)
chr3 (53-153)||(8895254-8895354)
chr3 (62-148)||(53902564-53902650)
chr3 (112-153)||(1031883-1031924)
chr3 (62-207)||(53901613-53901757)
chr3 (109-201)||(5411213-5411305)
[»] chr7 (23 HSPs)
chr7 (50-214)||(35045809-35045973)
chr7 (50-214)||(43704367-43704531)
chr7 (50-212)||(35044658-35044821)
chr7 (54-208)||(40322154-40322309)
chr7 (50-212)||(40321108-40321270)
chr7 (50-214)||(43703090-43703254)
chr7 (50-244)||(36584820-36585013)
chr7 (50-214)||(42520259-42520422)
chr7 (51-214)||(42521174-42521338)
chr7 (57-210)||(23153552-23153705)
chr7 (68-212)||(47535698-47535842)
chr7 (56-214)||(47536771-47536929)
chr7 (50-213)||(36583894-36584059)
chr7 (97-210)||(33070646-33070758)
chr7 (62-209)||(40881133-40881279)
chr7 (56-202)||(16957327-16957473)
chr7 (62-206)||(29408291-29408435)
chr7 (53-153)||(29409156-29409256)
chr7 (56-212)||(46196895-46197051)
chr7 (53-153)||(36395910-36396011)
chr7 (57-153)||(25742928-25743024)
chr7 (62-173)||(29344241-29344352)
chr7 (47-119)||(19218893-19218965)
[»] chr8 (20 HSPs)
chr8 (50-244)||(41767079-41767272)
chr8 (50-214)||(43415883-43416047)
chr8 (50-214)||(44770529-44770693)
chr8 (52-212)||(41766161-41766321)
chr8 (47-188)||(44769742-44769882)
chr8 (50-142)||(43414682-43414774)
chr8 (62-209)||(9189436-9189582)
chr8 (134-214)||(43414418-43414498)
chr8 (53-152)||(12820017-12820116)
chr8 (53-210)||(12818795-12818951)
chr8 (53-210)||(11080950-11081107)
chr8 (62-207)||(9190370-9190514)
chr8 (53-153)||(20066176-20066276)
chr8 (62-210)||(16346140-16346287)
chr8 (62-173)||(4534111-4534222)
chr8 (62-201)||(22914118-22914256)
chr8 (62-173)||(4534957-4535068)
chr8 (53-206)||(35462907-35463060)
chr8 (62-210)||(23768413-23768560)
chr8 (95-206)||(22913237-22913347)
[»] chr6 (18 HSPs)
chr6 (51-212)||(13562212-13562373)
chr6 (51-214)||(13561315-13561478)
chr6 (68-212)||(25439040-25439184)
chr6 (50-213)||(10673647-10673810)
chr6 (62-210)||(14174144-14174291)
chr6 (62-210)||(14178680-14178827)
chr6 (49-214)||(25437820-25437984)
chr6 (62-210)||(1757422-1757569)
chr6 (62-201)||(11724224-11724362)
chr6 (49-201)||(24317099-24317248)
chr6 (53-210)||(682306-682463)
chr6 (56-150)||(1948819-1948913)
chr6 (62-210)||(27108102-27108249)
chr6 (62-210)||(27149899-27150046)
chr6 (112-244)||(24318041-24318172)
chr6 (62-174)||(1692150-1692261)
chr6 (62-173)||(27107258-27107369)
chr6 (62-173)||(27149064-27149175)
[»] chr2 (14 HSPs)
chr2 (50-212)||(10330745-10330906)
chr2 (51-201)||(38593081-38593230)
chr2 (51-201)||(38596677-38596826)
chr2 (57-212)||(371889-372044)
chr2 (51-212)||(38593967-38594124)
chr2 (51-212)||(38597563-38597720)
chr2 (56-212)||(370806-370962)
chr2 (53-153)||(40542333-40542433)
chr2 (53-153)||(12364288-12364388)
chr2 (62-206)||(20630599-20630742)
chr2 (62-211)||(30178585-30178733)
chr2 (65-210)||(33553296-33553440)
chr2 (62-174)||(30179480-30179592)
chr2 (53-153)||(12365936-12366034)
[»] chr1 (13 HSPs)
chr1 (51-202)||(18655496-18655647)
chr1 (50-153)||(18656614-18656717)
chr1 (49-214)||(9850006-9850171)
chr1 (57-210)||(9822692-9822844)
chr1 (62-209)||(43808449-43808595)
chr1 (53-210)||(49618472-49618629)
chr1 (54-210)||(52439204-52439360)
chr1 (62-210)||(21246403-21246550)
chr1 (53-153)||(40722951-40723051)
chr1 (62-209)||(30743129-30743275)
chr1 (58-173)||(43807512-43807627)
chr1 (53-206)||(45042654-45042807)
chr1 (53-153)||(40721883-40721982)
[»] scaffold0013 (3 HSPs)
scaffold0013 (50-211)||(27871-28033)
scaffold0013 (50-195)||(32158-32302)
scaffold0013 (50-211)||(24634-24794)
[»] scaffold0065 (1 HSPs)
scaffold0065 (53-210)||(35404-35560)
[»] scaffold0041 (1 HSPs)
scaffold0041 (62-209)||(85004-85150)
[»] scaffold0009 (2 HSPs)
scaffold0009 (62-173)||(204615-204726)
scaffold0009 (62-210)||(205480-205627)
[»] scaffold0035 (1 HSPs)
scaffold0035 (55-119)||(21274-21338)


Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 52 - 478
Target Start/End: Original strand, 31205626 - 31206065
Alignment:
Q  52 tataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaa 151  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31205626 tataaattatgtgttggtgatacaccgttagatctgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaa 31205725  T
Q  152 ttaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcgnnnnnnnngaattaagttaagggaccaaata------ 245  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||          
T  31205726 ttaataattaaaacaaagataaaggaccattttgaaacgtttaatagttaggggaccaattcgaaaaaaa-gaattaagttaagggaccaaataattaat 31205824  T
Q  246 --------tatttttagaacgagttgtgctatatggcacgagagccatgatgcacgactattccacaactcaactttttaaaatgactcacgtatatctt 337  Q
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||    
T  31205825 taagcctatatttttagaacgagttgtgctatatggcacgagagccatgatgcacgactatttcacgactcagctttttaaaatgactcacgtatatctt 31205924  T
Q  338 ccgttcttcctttcttatttcttatgttttctttaaattcatattacacggaagcctcaaatatggattgtagggcaactcttcaatattggaatcccgg 437  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  31205925 ccgttctgcctttcttatttcttatgttttctttaaattcataatacacggaagcctcaaatatggattgtagtgcaactcttcaatattggaatccctg 31206024  T
Q  438 tgcttcttcaaaaggaagaattaaaacctcccaccgagtat 478  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31206025 tgcttcttcaaaaggaagaattaaaacctcccaccgagtat 31206065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 50 - 214
Target Start/End: Complemental strand, 31204755 - 31204591
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacca 149  Q
    ||||||||||||||||||||||||||| |||||||| ||||||  ||||||||||||  ||||||||||||||||||||||||||||||||||| |||||    
T  31204755 aatataaattatgtgttggtgatacactgttagatctgatggacatcctttatccaacggtcttctttttaaggagtttaaaattaataaaataggacca 31204656  T
Q  150 aattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcg 214  Q
    |||| || ||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||    
T  31204655 aattgatgattaaaataaagataaatgaccattttgaaacgtttaatagttaggggaccaattcg 31204591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 50 - 213
Target Start/End: Original strand, 54823173 - 54823336
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacca 149  Q
    |||||||||||||||||||| |||||  ||||||||| ||||| |||| ||||||||  ||||||||||||  |  ||||||||||||||||||||| ||    
T  54823173 aatataaattatgtgttggtaatacatggttagatccaatggacctccattatccaacggtcttctttttattggatttaaaattaataaaatatgatca 54823272  T
Q  150 aattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattc 213  Q
    |||| || | ||||||||||||||| || |||||| |||||||||||||||| |||||||||||    
T  54823273 aattgatgactaaaacaaagataaaggaccattttaaaacgtttaatagttatgggaccaattc 54823336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 57 - 213
Target Start/End: Complemental strand, 21569444 - 21569288
Alignment:
Q  57 attatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaat 156  Q
    |||| ||||| ||||||||| |||||||| |||||| |||||||||||||  ||||||||||| ||  ||||||||||||||||||||||  ||||  ||    
T  21569444 attaggtgttagtgatacactgttagatctgatggacctcctttatccaacggtcttctttttgagaggtttaaaattaataaaatatgattaaatagat 21569345  T
Q  157 aattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattc 213  Q
     || |||||||||||||| || ||  |||||||||||||||||||||||||||||||    
T  21569344 gatgaaaacaaagataaatgaccaaattgaaacgtttaatagttaggggaccaattc 21569288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 49 - 213
Target Start/End: Complemental strand, 54822580 - 54822416
Alignment:
Q  49 taatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacc 148  Q
    |||| ||||||||||||||||||||||  ||||||||| ||||| |||||||||||||  |||||||||||   |  |||||||||||||||||| || |    
T  54822580 taatttaaattatgtgttggtgatacatggttagatccaatggacctcctttatccaacagtcttctttttgttggatttaaaattaataaaataggatc 54822481  T
Q  149 aaattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattc 213  Q
    ||||| || | ||||||||| ||||| || |||||||||||||| |||||||| |||||||||||    
T  54822480 aaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttatgggaccaattc 54822416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 66 - 214
Target Start/End: Original strand, 21570354 - 21570502
Alignment:
Q  66 tggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataattaaaac 165  Q
    |||||||||||  ||||||| ||| || |||||||||||||  ||||||||||| ||  ||||||||||||||||||| || |||||| || || |||||    
T  21570354 tggtgatacacgattagatctgatagacctcctttatccaacggtcttctttttgagaggtttaaaattaataaaataggatcaaattgatgatgaaaac 21570453  T
Q  166 aaagataaacgatcattttgaaacgtttaatagttaggggaccaattcg 214  Q
    ||||||||| || ||  ||||||||||||||||||||||||||||||||    
T  21570454 aaagataaatgaccaaattgaaacgtttaatagttaggggaccaattcg 21570502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 55 - 206
Target Start/End: Complemental strand, 42713658 - 42713508
Alignment:
Q  55 aaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaatta 154  Q
    |||||| |||||||||||| |||||||||| ||||||| |||||||||||||  |||||||||||||  || || ||||||||||||||  ||||||||     
T  42713658 aaattaggtgttggtgatataccgttagatacgatggacctcctttatccaacagtcttctttttaa-aaggtttaaattaataaaatagaaccaaattg 42713560  T
Q  155 ataattaaaacaaagataaacgatcattttgaaacgtttaatagttagggga 206  Q
    ||    ||||||||||||||  | ||  |||||||| |||||||||| ||||    
T  42713559 atggcaaaaacaaagataaaaaaccaaattgaaacgcttaatagttaaggga 42713508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 53 - 155
Target Start/End: Complemental strand, 20944474 - 20944372
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaat 152  Q
    |||||||| ||||||||||||||| ||||||||  || |||||| |||||||||   || ||||||| ||||| ||||||||||| ||||||||||||||    
T  20944474 ataaattaggtgttggtgatacacggttagatctaatagatctcatttatccaacgatcctcttttttaggaggttaaaattaatgaaatatgaccaaat 20944375  T
Q  153 taa 155  Q
    |||    
T  20944374 taa 20944372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 44218989 - 44219107
Alignment:
Q  96 cctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataattaaaacaaagataaacgatcattttgaaacgtttaa 195  Q
    ||||||| |||  |||||| |||| ||  ||||||||| ||||||||| ||||||||| || || |||||||||||||| || || ||| ||  ||||||    
T  44218989 cctttattcaacggtcttcattttgagaggtttaaaatcaataaaataggaccaaattgatgataaaaacaaagataaaggaccaatttaaagtgtttaa 44219088  T
Q  196 tagttaggggaccaattcg 214  Q
    |||||||||||||||||||    
T  44219089 tagttaggggaccaattcg 44219107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 210
Target Start/End: Complemental strand, 5417492 - 5417345
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| || ||||  |||| |  ||||| || |||  |||| |||||| |||  |||||||||||||||||||||||||||| || |  |    
T  5417492 gtgttggtgatacacggtaagatatgatgaacttccttgattcaatggtctacttttttagggatttaaaattaataaaatatgaccaaattgatgacga 5417393  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
    |||||||||| || |||||  ||||||| ||||||||||| ||||||||    
T  5417392 aaacaaagat-aaggatcaaattgaaacatttaatagttaagggaccaa 5417345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 62 - 209
Target Start/End: Original strand, 47243918 - 47244064
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||| ||| ||||| |||||||  |||| |  ||||||||||||  ||||||||||| |||  |||||||||||||||||||||||||||  || |  |    
T  47243918 gtgtttgtggtacacggttagatatgatgaacttcctttatccaacggtcttcttttttagggatttaaaattaataaaatatgaccaaatcgatgacga 47244017  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggacca 209  Q
    |||||||||| || || ||  |||||| |||||||||||| |||||||    
T  47244018 aaacaaagat-aaggaccaaattgaaatgtttaatagttaagggacca 47244064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 20945395 - 20945492
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaa 150  Q
    |||||||| ||||||||||||||| ||||||||  || || ||| |||||||||  ||| ||||||| ||||| ||||||||||| ||||| ||||||    
T  20945395 ataaattaggtgttggtgatacacagttagatctaatagaactcatttatccaacggtcctcttttttaggaggttaaaattaatgaaataggaccaa 20945492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 5418157 - 5418268
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| |||||||  |||| |  ||||||||||||  ||||||||||| | |  ||| |||||||||||||| |||||||| ||| |  |    
T  5418157 gtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaataaaataggaccaaatcaatgacga 5418256  T
Q  162 aaacaaagataa 173  Q
    ||||||||||||    
T  5418257 aaacaaagataa 5418268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 209
Target Start/End: Original strand, 47573572 - 47573718
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||| | ||||| |||||||  |||| |  ||||||||||||  ||||||||||| ||   |||||||||||||||||||||||||||  || |  |    
T  47573572 gtgttggcggtacacggttagatatgatgaacttcctttatccaacggtcttctttttcagagatttaaaattaataaaatatgaccaaatcgatgacaa 47573671  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggacca 209  Q
    ||||||||||||  || ||  || |||||||||||||||| |||||||    
T  47573672 aaacaaagataag-gaccaaattaaaacgtttaatagttaagggacca 47573718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 207
Target Start/End: Complemental strand, 47572774 - 47572630
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||| ||||| |||||||  |||| |  ||||||||||||  ||||||||||| |||  |||||||||||||||||  ||||||||  | ||  |    
T  47572774 gtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttcttttttagggatttaaaattaataaaattggaccaaatcgacaacga 47572675  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggac 207  Q
    |||||||||| || || ||  ||||||| ||||||||||| |||||    
T  47572674 aaacaaagat-aaggaccaaattgaaacatttaatagttaagggac 47572630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 62 - 209
Target Start/End: Original strand, 50497900 - 50498046
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||| ||||| |||||||  |||| |  ||||||||||||  ||| |||||||  ||  |||||||||||||||||||| ||||||  || |  |    
T  50497900 gtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcatctttttttgggatttaaaattaataaaatatggccaaatcgatgacaa 50497999  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggacca 209  Q
    |||||||||| || || ||  ||||||||||||||| ||| |||||||    
T  50498000 aaacaaagat-aatgaccaaattgaaacgtttaataattaagggacca 50498046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 46425919 - 46426013
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgac 147  Q
    ||||||||  ||||||| ||||||||||| ||| |||||| |||||||||||||  |||| |||||| |||   ||||||||||  |||||||||    
T  46425919 ataaattagatgttggttatacaccgttaaatctgatggacctcctttatccaacagtctccttttttagggagttaaaattaacgaaatatgac 46426013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 210
Target Start/End: Original strand, 49923683 - 49923840
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaat 152  Q
    |||||| | ||||||||||||||| |||||||| ||| || ||| | |||||||  |||| |||||   |  | ||||||| ||||||||| | ||||||    
T  49923683 ataaatcacgtgttggtgatacacagttagatctgatagacctcatctatccaacggtctccttttcttgagggttaaaataaataaaatagggccaaat 49923782  T
Q  153 t-aataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
    | ||| || |||| || |||||| || || |||||||||||||||||||| ||||||||    
T  49923783 tgaatgatgaaaagaa-gataaaggaccaatttgaaacgtttaatagttaagggaccaa 49923840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 210
Target Start/End: Complemental strand, 54372944 - 54372787
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaat 152  Q
    |||||| | ||||||||||||||| ||||||||  || || ||| |||||||||  |||| |||||   || | ||||||| ||||||||| ||||||||    
T  54372944 ataaatcaggtgttggtgatacacagttagatctaatagacctcatttatccaacggtctccttttcttgggggttaaaatgaataaaataggaccaaat 54372845  T
Q  153 t-aataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
    | ||| ||  |||  |||||||| || || |||| |||||||||||||||| |||||||    
T  54372844 tgaatgatggaaa-gaagataaaggaccaatttggaacgtttaatagttagaggaccaa 54372787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 42698638 - 42698723
Alignment:
Q  112 ttctttttaaggagtttaaaattaataaaatatgaccaaattaataattaaaacaaagataaacgatcattttgaaacgtttaata 197  Q
    |||||||||||  ||||||||| ||||||||  ||| ||||| || || |||||||||||||| || ||  |||||||||||||||    
T  42698638 ttctttttaagtggtttaaaataaataaaatgggactaaattgatgatgaaaacaaagataaatgaccaaattgaaacgtttaata 42698723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 207
Target Start/End: Original strand, 43709802 - 43709946
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||| ||||| |||||||  |||| |  ||||||||||||  ||||| |||||  ||  |||||||||||||||||  | ||||||  || |  |    
T  43709802 gtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttgttttttggggatttaaaattaataaaattggtccaaatcgatgacga 43709901  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggac 207  Q
    ||||||||||||| || ||  ||||||||||||||||||| |||||    
T  43709902 aaacaaagataaa-gaccaaattgaaacgtttaatagttaagggac 43709946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 48413491 - 48413576
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgac 147  Q
    ||||||||| ||||| |||||||  |||| |  ||||||||||||  ||||||||||| ||   ||||||||||||||||||||||    
T  48413491 gtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttcttttttagagatttaaaattaataaaatatgac 48413576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 17522012 - 17521912
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaat 152  Q
    |||||||| ||||||||||||||| ||||||||  || || ||  |||||||||  ||||||||||| ||| | |||||||| |  ||||| ||||||||    
T  17522012 ataaattaagtgttggtgatacactgttagatctcatagaccttgtttatccaatggtcttcttttttaggggattaaaattgacgaaataggaccaaat 17521913  T
Q  153 t 153  Q
    |    
T  17521912 t 17521912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 207
Target Start/End: Original strand, 37642458 - 37642613
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaa-ggagtttaaaattaataaaatatgaccaaa 151  Q
    |||||| | |||||||||||||||  ||||||| |||  | ||| |||||||||  |||| ||||||   |||| ||||||| ||| ||||| |||||||    
T  37642458 ataaatcaggtgttggtgatacacaattagatctgataaacctcatttatccaatggtctccttttttttggaggttaaaatgaatgaaataggaccaaa 37642557  T
Q  152 tt-aataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggac 207  Q
    || ||| ||  ||| || |||||| ||  ||||||||||||||||||||||||||||    
T  37642558 ttgaatgatggaaagaa-gataaaggactattttgaaacgtttaatagttaggggac 37642613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 174
Target Start/End: Complemental strand, 47243140 - 47243028
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||| |||||  ||||||  |||| |  ||||||||||||  ||||||||||| |||  |||||||||||||||||  ||||||||  || |  |    
T  47243140 gtgttggtggtacacatttagatatgatgaacttcctttatccaacggtcttcttttttagggatttaaaattaataaaattggaccaaatcgatgacga 47243041  T
Q  162 aaacaaagataaa 174  Q
    |||||||||||||    
T  47243040 aaacaaagataaa 47243028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 50497150 - 50497072
Alignment:
Q  95 tcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataattaaaacaaagataa 173  Q
    ||||||||||||  ||||||||||| |||  |||||||||||||||||  ||||||||  || |  |||||||||||||    
T  50497150 tcctttatccaacggtcttcttttttagggatttaaaattaataaaattggaccaaatcgatgacgaaaacaaagataa 50497072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 44218042 - 44217994
Alignment:
Q  57 attatgtgttggtgatacaccgttagatccgatggatctcctttatcca 105  Q
    |||| ||||| |||||||||||||||||| ||||||  |||||||||||    
T  44218042 attaggtgttagtgatacaccgttagatctgatggacttcctttatcca 44217994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 135; Significance: 4e-70; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 52 - 214
Target Start/End: Complemental strand, 5163859 - 5163697
Alignment:
Q  52 tataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaa 151  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||    
T  5163859 tataaattatgtgttggtgatacaccgttagattcgatggatctcctttatccaacggtcttatttttaaggagtttaaaattaataaaatatgaccaaa 5163760  T
Q  152 ttaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcg 214  Q
    || |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  5163759 ttgataattaaaacaaagataaaggatcattttgaaacatttaatagttaggggaccaattcg 5163697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 50 - 213
Target Start/End: Complemental strand, 8358369 - 8358206
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacca 149  Q
    |||||||||||||||||||||||||||||||||||  |||||| |||||||| | ||  |||||||||||||||| ||||||||||||||||||||||||    
T  8358369 aatataaattatgtgttggtgatacaccgttagatttgatggacctcctttaacgaacggtcttctttttaaggaatttaaaattaataaaatatgacca 8358270  T
Q  150 aattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattc 213  Q
    || | || | ||||||||||||||| || |||||| |||||||||||| |||||||| ||||||    
T  8358269 aaatgatgactaaaacaaagataaaagaccattttaaaacgtttaataattaggggatcaattc 8358206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 50 - 214
Target Start/End: Original strand, 8359329 - 8359493
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacca 149  Q
    |||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||   ||||||||||||||  ||||||||| |||||||| |||||    
T  8359329 aatataaattatgtgttggtgatacaccgttaaatccgacggacctcctttatccaacgatcttctttttaagggatttaaaatttataaaataggacca 8359428  T
Q  150 aattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcg 214  Q
    || | || | ||||||||||||||| || |||||| |||| |||||||||||||||||| |||||    
T  8359429 aaatgatgactaaaacaaagataaaagaccattttaaaacttttaatagttaggggaccgattcg 8359493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 51 - 214
Target Start/End: Original strand, 38603666 - 38603829
Alignment:
Q  51 atataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaa 150  Q
    |||||||| | |||||||||||||||  ||||||| |||||| || ||||||||||  ||||||||||| ||||||||||||||||||||||| ||||||    
T  38603666 atataaatgaggtgttggtgatacactattagatctgatggaccttctttatccaacggtcttcttttttaggagtttaaaattaataaaataggaccaa 38603765  T
Q  151 attaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcg 214  Q
    ||| || | ||||||||||||||| || |||||||||| |||||||||||| | ||||||||||    
T  38603766 attgatgactaaaacaaagataaaggaccattttgaaaagtttaatagttaagagaccaattcg 38603829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 56 - 214
Target Start/End: Complemental strand, 42962218 - 42962060
Alignment:
Q  56 aattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaa 155  Q
    ||||| |||||||||||||||| |||||||  || || |||||||||||||  ||||||||||| ||  ||||||||||||||||||| ||||||||| |    
T  42962218 aattaggtgttggtgatacaccattagatcttatagacctcctttatccaacggtcttctttttgagaggtttaaaattaataaaataggaccaaattga 42962119  T
Q  156 taattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcg 214  Q
    | || |||||||||||||| || || ||| || ||||||||||||||||||||||||||    
T  42962118 tgatgaaaacaaagataaaggaccaatttaaagcgtttaatagttaggggaccaattcg 42962060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 51 - 201
Target Start/End: Complemental strand, 38602863 - 38602712
Alignment:
Q  51 atataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaa 150  Q
    |||||||||| ||||||||||||||  |||||||| |||| || || ||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  38602863 atataaattaagtgttggtgatacattgttagatctgatgaatatcttttatccaactgtcttctttttgaggagtttaaaattaataaaatatgaccaa 38602764  T
Q  151 attaataattaaaa-caaagataaacgatcattttgaaacgtttaatagtta 201  Q
    ||| || | |||||  ||||||| | || |||||| ||||||||||||||||    
T  38602763 atttatgactaaaataaaagatagaggaccattttaaaacgtttaatagtta 38602712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 39050830 - 39050727
Alignment:
Q  109 gtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggacc 208  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| || | ||||| ||||||||| || ||||||||||||||||||||||| ||||||    
T  39050830 gtcttctttttgaggagtttaaaattaataaaatatgaccaaatttatgactaaaataaagataaaggaccattttgaaacgtttaatagttaagggacc 39050731  T
Q  209 aatt 212  Q
    ||||    
T  39050730 aatt 39050727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 51 - 245
Target Start/End: Original strand, 39051589 - 39051781
Alignment:
Q  51 atataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaa 150  Q
    |||||||||| |||||| ||||||||  ||||||| |||||| || ||||||| |   ||||| ||||| ||||||||||||||||||||||| || |||    
T  39051589 atataaattaggtgttgatgatacactattagatctgatggaccttctttatctagcggtctt-tttttgaggagtttaaaattaataaaataggatcaa 39051687  T
Q  151 attaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcgnnnnnnnngaattaagttaagggaccaaata 245  Q
    ||| || | ||||||||||||||| || ||||||||||| ||||||||||| | ||||||||||        |||||||||||||||||||||||    
T  39051688 attgatgactaaaacaaagataaaggaccattttgaaacatttaatagttaagagaccaattcg-aaaaaaagaattaagttaagggaccaaata 39051781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 87 - 212
Target Start/End: Original strand, 42963167 - 42963292
Alignment:
Q  87 gatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataattaaaacaaagataaacgatcattttga 186  Q
    |||||| |||||||||||||  ||| ||||||| ||  ||||||||||||||||||| ||  ||||| || || |||||||||||||| || ||  ||||    
T  42963167 gatggacctcctttatccaacggtcatctttttgagaggtttaaaattaataaaataggattaaattgatgatgaaaacaaagataaatgaccaaattga 42963266  T
Q  187 aacgtttaatagttaggggaccaatt 212  Q
    |||||||||||||||| |||||||||    
T  42963267 aacgtttaatagttagaggaccaatt 42963292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 98 - 214
Target Start/End: Complemental strand, 301513 - 301397
Alignment:
Q  98 tttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataattaaaacaaagataaacgatcattttgaaacgtttaata 197  Q
    |||||||||  ||||||||| ||||  ||||||||||||||||||| || |||||| ||   ||||||||||| ||| |||||||||  |||||||||||    
T  301513 tttatccaatagtcttctttctaagaggtttaaaattaataaaataggatcaaattgatggctaaaacaaagagaaaagatcattttataacgtttaata 301414  T
Q  198 gttaggggaccaattcg 214  Q
    ||||| ||| |||||||    
T  301413 gttagaggatcaattcg 301397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 62 - 210
Target Start/End: Original strand, 11907089 - 11907236
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| || ||||  |||| |  ||||||||||||  |||| |||||| |||  |||||||||||||||||||||||||||| || |  |    
T  11907089 gtgttggtgatacacggtaagatatgatgaacttcctttatccaatggtctacttttttagggatttaaaattaataaaatatgaccaaattgatgacga 11907188  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
    |||||||||| || || ||  ||||||| ||||||||||| ||||||||    
T  11907189 aaacaaagat-aaggaccaaattgaaacatttaatagttaagggaccaa 11907236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 201
Target Start/End: Complemental strand, 4904391 - 4904254
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||| ||| ||||| |||||||  |||| |  ||||||||||||  ||||||||||| || | |||||||||||||||||||||||||||  || || |    
T  4904391 gtgtttgtggtacacggttagatatgatgaacttcctttatccaacggtcttcttttttagaaatttaaaattaataaaatatgaccaaatcgatgatga 4904292  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagtta 201  Q
    ||||||||||||  |  ||  |||||||||||||||||||    
T  4904291 aaacaaagataa--ggacaaattgaaacgtttaatagtta 4904254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 210
Target Start/End: Original strand, 14357809 - 14357957
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaatt-aataatt 160  Q
    ||||||||||||||| |||||||  ||| |||||| |||||||||  |||| ||||||  || | ||||||||||||||||| ||||||||| ||| ||     
T  14357809 gtgttggtgatacacagttagatatgatagatctcatttatccaacggtctcctttttttgggggttaaaattaataaaataggaccaaattgaatgatg 14357908  T
Q  161 aaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
     |||  |||||||| || |  |||| | ||||||||||||||||||||||    
T  14357909 gaaa-gaagataaatgaccgatttggagcgtttaatagttaggggaccaa 14357957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 210
Target Start/End: Complemental strand, 39134855 - 39134708
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| |||||||  |||| |  ||||||||||||  || |||||||| |||  ||| ||||||||||||||  |||||||| ||    |    
T  39134855 gtgttggtgatacacggttagatatgatgaacttcctttatccaacggtattcttttttagggatttcaaattaataaaatagcaccaaattgatgtcga 39134756  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
    |||||||||| ||  | ||  ||||||||||||||||||| ||||||||    
T  39134755 aaacaaagat-aagaaccaaattgaaacgtttaatagttaagggaccaa 39134708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 206
Target Start/End: Original strand, 39135576 - 39135719
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| || ||||  |||| |  ||||||||||||  |||| ||||||  ||  |||||||||||||||||| ||||||||| || |  |    
T  39135576 gtgttggtgatacacggtaagatatgatgaacttcctttatccaatggtctacttttttggggatttaaaattaataaaataggaccaaattgatgagga 39135675  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttagggga 206  Q
    |||||||||| || || ||  ||||||| ||||||||||| ||||    
T  39135676 aaacaaagat-aatgaccaaattgaaacatttaatagttaaggga 39135719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 207
Target Start/End: Original strand, 30916036 - 30916190
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaat 152  Q
    |||||| | |||||||| |||||| |||||||| ||| || ||  |||||||||  |||| ||||||  |||| ||||||| ||| ||||||||||||||    
T  30916036 ataaatcaggtgttggtaatacacagttagatctgatagacctaatttatccaatggtctcctttttttggaggttaaaatgaatgaaatatgaccaaat 30916135  T
Q  153 t-aataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggac 207  Q
    | ||| ||  |||  |||||||| || || |||  |||||||||||||||||||||    
T  30916136 tgaatgatggaaa-gaagataaaagaccactttagaacgtttaatagttaggggac 30916190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 1011977 - 1012041
Alignment:
Q  55 aaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttcttttt 119  Q
    ||||||||||||| |||||||||||||||||   | || |||||||||| ||  |||||||||||    
T  1011977 aaattatgtgttgatgatacaccgttagatctcgtagacctcctttatcaaacggtcttcttttt 1012041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 153
Target Start/End: Original strand, 30674748 - 30674848
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaat 152  Q
    |||||||| ||||||||||||||  ||||||||  |  || ||||||||| |||  |||| |||||| ||||| |||||||| | |||||| ||| ||||    
T  30674748 ataaattaggtgttggtgatacatggttagatcttacagacctcctttattcaacggtctccttttttaggagattaaaattgacaaaataggactaaat 30674847  T
Q  153 t 153  Q
    |    
T  30674848 t 30674848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 49 - 244
Target Start/End: Original strand, 50003137 - 50003331
Alignment:
Q  49 taatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacc 148  Q
    ||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||  ||||| ||||||||||||||||||||||||||||| ||||    
T  50003137 taatataaattatgtgttggtgatacaccgttagatctgattgacctcctttatccaacggtcttatttttaaggagtttaaaattaataaaataggacc 50003236  T
Q  149 aaattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcgnnnnnnnngaattaagttaagggaccaaat 244  Q
    ||||| || ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  50003237 aaattgatgattaaaacaaacataaaggaccattttgaaacgtttaatagttaggggaccaattcg-aaataaagaattaagttaagggaccaaat 50003331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 50 - 211
Target Start/End: Complemental strand, 50002614 - 50002453
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacca 149  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||||||||| |||||||||||||||||||||||| ||| |    
T  50002614 aatataaattatgtgttggtgatacaccgttagatctgatggatctcctttatccaacgatcttcttttgaaggagtttaaaattaataaaataggacta 50002515  T
Q  150 aattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaat 211  Q
    |||| || ||||||||||| ||||| || ||||| |||||||||||||||||||||||||||    
T  50002514 aattgatgattaaaacaaacataaaggaccatttcgaaacgtttaatagttaggggaccaat 50002453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 50 - 214
Target Start/End: Original strand, 21248172 - 21248336
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacca 149  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||  ||||||||||||||  ||||||||||||||||||| |||||    
T  21248172 aatataaattatgtgttggtgatacaccgttagatccgatggacctccttaatccaacagtcttctttttaagaggtttaaaattaataaaataggacca 21248271  T
Q  150 aattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcg 214  Q
    || |||| | ||||||||||||||  || ||||||||||||||||||||||||| || |||||||    
T  21248272 aaataatgactaaaacaaagataagggaccattttgaaacgtttaatagttaggagatcaattcg 21248336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 52 - 212
Target Start/End: Complemental strand, 21247435 - 21247275
Alignment:
Q  52 tataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaa 151  Q
    ||||||||| |||||||||||||||| |||||| ||||| |||||||| ||||||  ||||||||||||| |||||||||||||||||||||  ||||||    
T  21247435 tataaattacgtgttggtgatacaccattagattcgatgcatctccttaatccaacggtcttctttttaaagagtttaaaattaataaaatagaaccaaa 21247336  T
Q  152 ttaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaatt 212  Q
     | || | ||||||||||||||  || ||||||||||||||||||||||||||||||||||    
T  21247335 attatgactaaaacaaagataagggaccattttgaaacgtttaatagttaggggaccaatt 21247275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 50 - 202
Target Start/End: Original strand, 55387561 - 55387713
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacca 149  Q
    |||||||||||||||||| |||||||| |||||||| |||| | |||||||||||||  ||||| |||||||||| |||||||| |||||||||||||||    
T  55387561 aatataaattatgtgttgatgatacactgttagatcggatgaacctcctttatccaacagtcttttttttaaggattttaaaatcaataaaatatgacca 55387660  T
Q  150 aattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttag 202  Q
    |||| || ||||||||||||||||| |||||| || |||||||||||||||||    
T  55387661 aattgatgattaaaacaaagataaaagatcatcttaaaacgtttaatagttag 55387713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 62 - 244
Target Start/End: Original strand, 27226466 - 27226647
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||  ||| ||||||||  ||||| |||||||||||||   |||||||||| ||| ||||||||||||||||||| ||||||||| || || |    
T  27226466 gtgttggtgacgcactgttagatcttatggacctcctttatccaacgatcttctttttgaggggtttaaaattaataaaataggaccaaattgatgatga 27226565  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcgnnnnnnnngaattaagttaagggaccaaat 244  Q
    ||||||| ||||| || ||  |||||||||||| || ||| || |||||||||        ||||||||||||||||||||||    
T  27226566 aaacaaacataaaggaccaaattgaaacgtttattatttaaggtaccaattcg-caaaaaagaattaagttaagggaccaaat 27226647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 57 - 174
Target Start/End: Complemental strand, 5409532 - 5409415
Alignment:
Q  57 attatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaat 156  Q
    |||| ||||| |||||||||||||| ||| |||| | |||||||||||||  ||||||||||||||  ||||||||||||||||||  || |||||| ||    
T  5409532 attaggtgttagtgatacaccgttaaatctgatgaacctcctttatccaacggtcttctttttaagaggtttaaaattaataaaattggatcaaattgat 5409433  T
Q  157 aattaaaacaaagataaa 174  Q
     || ||||||||||||||    
T  5409432 gatgaaaacaaagataaa 5409415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 50 - 214
Target Start/End: Complemental strand, 27225634 - 27225470
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacca 149  Q
    ||||||||||| |||| ||||||||||| ||||||| ||||||  | ||||||||||  ||||||||||| |   ||||||||||||||||||| ||| |    
T  27225634 aatataaattaggtgtcggtgatacacctttagatctgatggactttctttatccaacggtcttctttttgaaaggtttaaaattaataaaataggacta 27225535  T
Q  150 aattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcg 214  Q
    |||| || |  |||||||| |||||  | ||  |||||||||||| |||||| | ||||||||||    
T  27225534 aattgatgacgaaaacaaacataaagaaccaaattgaaacgtttattagttaagagaccaattcg 27225470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 53 - 173
Target Start/End: Complemental strand, 46688603 - 46688484
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaat 152  Q
    |||||||| ||||||||||||||| |||||||  |||| | || |||||||||   ||||||||||| |||| |||||||||||||||||||||||||||    
T  46688603 ataaattaggtgttggtgatacacagttagatatgatgaacctgctttatccagcggtcttcttttttagga-tttaaaattaataaaatatgaccaaat 46688505  T
Q  153 taataattaaaacaaagataa 173  Q
      || |  |||||||||||||    
T  46688504 cgatgaaaaaaacaaagataa 46688484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 212
Target Start/End: Complemental strand, 5384615 - 5384460
Alignment:
Q  57 attatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaat 156  Q
    |||| ||||| |||||||||||||| ||| |||| | ||| ||||||| |  ||||||||||||||  ||||||||||||||||||  ||||||||| ||    
T  5384615 attaggtgttagtgatacaccgttaaatctgatgaacctcatttatcccacggtcttctttttaagaggtttaaaattaataaaattggaccaaattgat 5384516  T
Q  157 aattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaatt 212  Q
      | |||||||||||| | || ||  ||||||||||| ||| |||  |||||||||    
T  5384515 gttgaaaacaaagatagaggaccaaattgaaacgttttataattaaaggaccaatt 5384460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 206
Target Start/End: Complemental strand, 39530948 - 39530840
Alignment:
Q  97 ctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataattaaaacaaagataaacgatcattttgaaacgtttaat 196  Q
    ||||||||||  ||||||||||||| |   ||||||||||||||||||||||||||  || |  ||||||||||| || |||||  ||||||||||||||    
T  39530948 ctttatccaacggtcttctttttaaaggaattaaaattaataaaatatgaccaaatcgatgacgaaaacaaagat-aaggatcaaattgaaacgtttaat 39530850  T
Q  197 agttagggga 206  Q
    ||||| ||||    
T  39530849 agttaaggga 39530840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 62 - 210
Target Start/End: Complemental strand, 45730825 - 45730678
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| |||||||  |||| |  ||||||||||||  ||||||||||| | |  ||| |||||||||||||| ||| ||||  || || |    
T  45730825 gtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaataaaataggactaaatcgatgatga 45730726  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
    |||||||||| || |  ||  ||||||||||||||||||| ||||||||    
T  45730725 aaacaaagat-aaggtccaaattgaaacgtttaatagttaagggaccaa 45730678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 39531744 - 39531855
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||| ||||| |||||||  |||| |  ||||||||||||  ||||||||||| |||  |||||||||||||||||  ||||||||  ||||  |    
T  39531744 gtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttcttttttagggatttaaaattaataaaattggaccaaatcgataacga 39531843  T
Q  162 aaacaaagataa 173  Q
    ||||||||||||    
T  39531844 aaacaaagataa 39531855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 210
Target Start/End: Complemental strand, 32999985 - 32999838
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| || ||||  |||| |  ||| |||||||| ||||| |||||  |||  |||||||||||||||||| ||||||||| || |  |    
T  32999985 gtgttggtgatacacggtaagatatgatgaacttcccttatccaattgtctacttttatagggatttaaaattaataaaataggaccaaattgatgacga 32999886  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
    ||||||||||||   ||||  || |||| ||||||||||| ||||||||    
T  32999885 aaacaaagataaga-atcaaattaaaacatttaatagttaagggaccaa 32999838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 201
Target Start/End: Original strand, 50765697 - 50765840
Alignment:
Q  57 attatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaat 156  Q
    |||| ||||||  ||||||| |||||||  |||| |||||||||||||||  ||||||||||| ||   ||||||||||||||||||  | |||||  ||    
T  50765697 attaggtgttgaggatacacggttagatatgatgaatctcctttatccaatggtcttctttttgagagatttaaaattaataaaatagaatcaaatcgat 50765796  T
Q  157 aattaaaacaaagataaacgatcattttgaaacgtttaatagtta 201  Q
     |  ||||||||||| || || ||  |||||||||||||||||||    
T  50765797 gaccaaaacaaagat-aaggaccaaattgaaacgtttaatagtta 50765840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 2089030 - 2088919
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| || ||||  |||| |  ||||||||  ||  |||| |||||| |||  |||||||||||||||||| ||||||||| || || |    
T  2089030 gtgttggtgatacacggtaagatatgatgaacttcctttatttaatggtctacttttttagggatttaaaattaataaaataggaccaaattgatgatga 2088931  T
Q  162 aaacaaagataa 173  Q
    ||||||||||||    
T  2088930 aaacaaagataa 2088919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 155
Target Start/End: Original strand, 2764004 - 2764106
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaat 152  Q
    |||||||| ||||||||||||||  ||||||||  |  ||||||||||||||||  |||| |||||| ||||| |||||||| |  ||||| ||| ||||    
T  2764004 ataaattaagtgttggtgatacatggttagatctcacagatctcctttatccaacggtctccttttttaggagattaaaattgacgaaataggactaaat 2764103  T
Q  153 taa 155  Q
    |||    
T  2764104 taa 2764106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 210
Target Start/End: Original strand, 14206711 - 14206855
Alignment:
Q  65 ttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaatt-aataattaaa 163  Q
    |||||||||||| |||||||| ||| || ||| ||||||| || ||||  |||||| |||  ||||||| ||||||||| ||||||||| ||| ||  ||    
T  14206711 ttggtgatacacagttagatctgatagacctcatttatcc-aacgtctcatttttatggatgttaaaatgaataaaataggaccaaattgaatgatggaa 14206809  T
Q  164 acaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
    |  |||||||| || || ||| ||||||||||||||||| |||||||    
T  14206810 a-gaagataaatgaccaatttaaaacgtttaatagttagaggaccaa 14206855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 210
Target Start/End: Original strand, 14214459 - 14214603
Alignment:
Q  65 ttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaatt-aataattaaa 163  Q
    |||||||||||| |||||||| ||| || ||| ||||||| || ||||  |||||| |||  ||||||| ||||||||| ||||||||| ||| ||  ||    
T  14214459 ttggtgatacacagttagatctgatagacctcatttatcc-aacgtctcatttttatggatgttaaaatgaataaaataggaccaaattgaatgatggaa 14214557  T
Q  164 acaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
    |  |||||||| || || ||| ||||||||||||||||| |||||||    
T  14214558 a-gaagataaatgaccaatttaaaacgtttaatagttagaggaccaa 14214603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 206
Target Start/End: Original strand, 46690212 - 46690365
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggag-tttaaaattaataaaatatgaccaaa 151  Q
    |||||||| ||||||||||||||| |||||||  | |  | |||||||||||||  |||||||||||   ||| ||||||||||||||||||  ||||||    
T  46690212 ataaattaggtgttggtgatacacggttagatatggtaaacctcctttatccaatggtcttcttttttgagagatttaaaattaataaaatagaaccaaa 46690311  T
Q  152 ttaataattaaaacaaagataaacgatcattttgaaacgtttaatagttagggga 206  Q
    |  || |  |||| | ||||||| |||||  || |||||||||||||||| ||||    
T  46690312 tcgatgacaaaaatatagataaa-gatcaaattaaaacgtttaatagttaaggga 46690365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 8895354 - 8895254
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaat 152  Q
    |||||||| ||||||||||||||| |||||||| ||| || ||  ||||||| |   ||| |||||| ||| | ||||||||||| ||||| ||||||||    
T  8895354 ataaattacgtgttggtgatacacggttagatctgatagacctaatttatccgatgatctccttttttagggggttaaaattaatgaaataggaccaaat 8895255  T
Q  153 t 153  Q
    |    
T  8895254 t 8895254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 53902564 - 53902650
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacc 148  Q
    |||||||||  |||| |||||||  |||| |  ||||||||||||  |||||| |||| |||  |||||||||||||||||||||||    
T  53902564 gtgttggtggaacacggttagatatgatgaacttcctttatccaacggtcttcgtttttagggatttaaaattaataaaatatgacc 53902650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 1031924 - 1031883
Alignment:
Q  112 ttctttttaaggagtttaaaattaataaaatatgaccaaatt 153  Q
    |||||||| |||  ||||||||||||||||||||||||||||    
T  1031924 ttcttttttagggatttaaaattaataaaatatgaccaaatt 1031883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 207
Target Start/End: Complemental strand, 53901757 - 53901613
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||| ||||| |||| ||  |||| |  ||||||||||||  ||||||||||| |||  ||||||||||||||||   ||||||||  || |  |    
T  53901757 gtgttggtggtacacggttatatatgatgaacttcctttatccaacggtcttcttttttagggatttaaaattaataaaagtggaccaaatcgatgacga 53901658  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggac 207  Q
    ||||||||||||| || ||  || |||| ||||||||||| |||||    
T  53901657 aaacaaagataaa-gaccaaattaaaacatttaatagttaagggac 53901613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 201
Target Start/End: Original strand, 5411213 - 5411305
Alignment:
Q  109 gtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataattaaaacaaagataaacgatcattttgaaacgtttaatagtta 201  Q
    ||||||||||| ||  ||||||||||||||||||| ||||| ||| ||    |||||||||||||| || ||  || |||| |||||||||||    
T  5411213 gtcttctttttgagatgtttaaaattaataaaataggaccacattgatggcgaaaacaaagataaaagaccaaattaaaacatttaatagtta 5411305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 50 - 214
Target Start/End: Original strand, 35045809 - 35045973
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacca 149  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||| || ||    
T  35045809 aatataaattatgtgttggtgatacatcgttagatccgatggatctcctttatccaacggtattctttttaaggagtttaaaattaataaaataggatca 35045908  T
Q  150 aattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcg 214  Q
    |||| || ||||||||||||||||| || ||||||||||||||||||||||||  ||||||||||    
T  35045909 aattgatgattaaaacaaagataaatgaccattttgaaacgtttaatagttagaagaccaattcg 35045973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 50 - 214
Target Start/End: Original strand, 43704367 - 43704531
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacca 149  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||| ||  |    
T  43704367 aatataaattatgtgttgatgatacaccgtaagatccgatggatctcctttatccaacggtcttctttttaaggggtttaaaattaataaaataggatta 43704466  T
Q  150 aattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcg 214  Q
    || | || | ||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  43704467 aaatgatgactaaaacaaagataaaggaccattttgaaacgtttaatagttaggggaccaattcg 43704531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 50 - 212
Target Start/End: Complemental strand, 35044821 - 35044658
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaat-aaaatatgacc 148  Q
    |||||||||||||||||||||||||||  |||||||  ||||| |||||||||||||  |||||||||||||||| |||||||||||| |||| ||||||    
T  35044821 aatataaattatgtgttggtgatacactcttagatctaatggacctcctttatccaacggtcttctttttaaggattttaaaattaataaaaaaatgacc 35044722  T
Q  149 aaattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaatt 212  Q
    ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  35044721 aaattgatgattaaaacaaagataaaggatcattttgaaacgtttaatagttagggaaccaatt 35044658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 54 - 208
Target Start/End: Original strand, 40322154 - 40322309
Alignment:
Q  54 taaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaatt 153  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||    
T  40322154 taaattatgtgttggtgatacatcgttagatccgatggacctcctttatccaattgtcttctttttaaggagtttaaaattaataaaataggatcaaatt 40322253  T
Q  154 aataattaaaacaaagataaacgatcattttg-aaacgtttaatagttaggggacc 208  Q
     || ||||||||||||||||| || ||||||| ||||||||| | |||||| ||||    
T  40322254 gatgattaaaacaaagataaaagaccattttgaaaacgtttattggttaggagacc 40322309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 50 - 212
Target Start/End: Complemental strand, 40321270 - 40321108
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacca 149  Q
    ||||||||||||||||||||||||||| ||||||||  ||||| |||||||||||||  ||||||||||||| || |||||||||||||||| | | |||    
T  40321270 aatataaattatgtgttggtgatacactgttagatctaatggacctcctttatccaacggtcttctttttaatgattttaaaattaataaaaaaggccca 40321171  T
Q  150 aattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaatt 212  Q
    |||| || ||||||||||||||||| |||||||||||||||||||||||||| || |||||||    
T  40321170 aattgatgattaaaacaaagataaaggatcattttgaaacgtttaatagttaaggaaccaatt 40321108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 50 - 214
Target Start/End: Complemental strand, 43703254 - 43703090
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacca 149  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||  |||||||||||||| | ||||||||||||||||||  ||||    
T  43703254 aatataaattatgtgttggtgatacaccgttagatccgatgcacctcctttatccaacggtcttctttttaagaaatttaaaattaataaaatagtacca 43703155  T
Q  150 aattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcg 214  Q
    |||| || || ||| || ||||||| || |||||| |||| ||||||||||||||||||||||||    
T  43703154 aattgatgatgaaagcatagataaaagaccattttaaaacatttaatagttaggggaccaattcg 43703090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 50 - 244
Target Start/End: Original strand, 36584820 - 36585013
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacca 149  Q
    ||||||||||||||||||||||| |||  ||||||   ||||| |||||||||||||  |||||| ||||||||  ||||||||||||||||||||||||    
T  36584820 aatataaattatgtgttggtgatccactcttagatataatggacctcctttatccaacggtcttcgttttaagggctttaaaattaataaaatatgacca 36584919  T
Q  150 aattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcgnnnnnnnngaattaagttaagggaccaaat 244  Q
    |||| || | ||||| ||||||||| || |||||||||| |||||||||||||||||||||||||        ||||||||||||||||||||||    
T  36584920 aattgatgactaaaataaagataaaggaccattttgaaatgtttaatagttaggggaccaattcg-aaaaaaagaattaagttaagggaccaaat 36585013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 50 - 214
Target Start/End: Complemental strand, 42520422 - 42520259
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacca 149  Q
    |||||||||||||||||||||||||||||||||||| ||| || |||||||||||||  |||| |||||||| | |||||||||| |||||||||||| |    
T  42520422 aatataaattatgtgttggtgatacaccgttagatctgatagacctcctttatccaacggtctactttttaatgggtttaaaattgataaaatatgacaa 42520323  T
Q  150 aattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcg 214  Q
    |||| || | ||||||||||||| | || || |||||||||||||||| ||||||||||||||||    
T  42520322 aattgatgactaaaacaaagatacaggacca-tttgaaacgtttaatatttaggggaccaattcg 42520259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 51 - 214
Target Start/End: Original strand, 42521174 - 42521338
Alignment:
Q  51 atataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaa 150  Q
    |||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||  ||||| |||||||||| ||||||||| |||||||| ||||||    
T  42521174 atataagttatgtgttggtgatacactgttagatccgatggacctcctttatccaacggtcttatttttaaggattttaaaattgataaaataggaccaa 42521273  T
Q  151 attaataattaaaacaaagataaacgatcattttgaaacgtttaatagtta-ggggaccaattcg 214  Q
    ||| || | |||||||||| || | || ||||||||||||||||||| ||| |||||||||||||    
T  42521274 attgatgactaaaacaaaggtagaggaccattttgaaacgtttaataattagggggaccaattcg 42521338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 57 - 210
Target Start/End: Original strand, 23153552 - 23153705
Alignment:
Q  57 attatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaat 156  Q
    |||| ||||| |||||||||||||||||| |||||| |||||||||||||  ||||||||||| ||  ||||||||||||||||||||||  ||||| ||    
T  23153552 attaggtgttagtgatacaccgttagatctgatggacctcctttatccaacagtcttctttttgagaggtttaaaattaataaaatatgattaaattgat 23153651  T
Q  157 aattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
     || |||||||||||||| || ||  ||||||||||||||||||||||||||||    
T  23153652 gataaaaacaaagataaatgaccaaattgaaacgtttaatagttaggggaccaa 23153705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 68 - 212
Target Start/End: Complemental strand, 47535842 - 47535698
Alignment:
Q  68 gtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataattaaaacaa 167  Q
    |||||||||||||||||| ||||||||||||||||||||  ||| ||||||| ||  ||||||||||||||||||| ||||||||| || || |||||||    
T  47535842 gtgatacaccgttagatctgatggatctcctttatccaacagtcatctttttgagaggtttaaaattaataaaataggaccaaattgatgataaaaacaa 47535743  T
Q  168 agataaacgatcattttgaaacgtttaatagttaggggaccaatt 212  Q
    ||||||| || ||  ||||||||||||||||||||||||| ||||    
T  47535742 agataaaggaccaaattgaaacgtttaatagttaggggactaatt 47535698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 56 - 214
Target Start/End: Original strand, 47536771 - 47536929
Alignment:
Q  56 aattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaa 155  Q
    ||||| |||||||||||||||| ||||||| ||| || ||| |||||||||  ||||||||||| || |||||||||| ||||||||| ||||||||| |    
T  47536771 aattaggtgttggtgatacaccattagatctgatagacctcttttatccaacggtcttctttttgagaagtttaaaatcaataaaataggaccaaattga 47536870  T
Q  156 taattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcg 214  Q
    | || |||||||||||||| || || ||| ||  |||||||||||||||||||||||||    
T  47536871 tgataaaaacaaagataaaggaccaatttaaagtgtttaatagttaggggaccaattcg 47536929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 50 - 213
Target Start/End: Complemental strand, 36584059 - 36583894
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaat--atgac 147  Q
    |||||||||||||||||| |||||||| |||||||||||| |||||| |||||||||  ||||||||||||||| ||||||||||||||||||  |  ||    
T  36584059 aatataaattatgtgttgatgatacactgttagatccgatagatctcttttatccaacagtcttctttttaaggggtttaaaattaataaaatagagaac 36583960  T
Q  148 caaattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattc 213  Q
    |||||| || | |||| ||||| ||||  || ||||| ||| ||||||||||||| | ||||||||    
T  36583959 caaattgatgactaaatcaaagctaaagaattattttaaaatgtttaatagttagagaaccaattc 36583894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 97 - 210
Target Start/End: Complemental strand, 33070758 - 33070646
Alignment:
Q  97 ctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataattaaaacaaagataaacgatcattttgaaacgtttaat 196  Q
    ||||||||||  ||||||||||| | |  ||||||||||||||||||||| |||||| || |  |||||||||||||| || ||  ||||||||||||||    
T  33070758 ctttatccaacggtcttcttttttatggatttaaaattaataaaatatgatcaaattgatgacaaaaacaaagataaa-gaccaaattgaaacgtttaat 33070660  T
Q  197 agttaggggaccaa 210  Q
    ||||| ||||||||    
T  33070659 agttaagggaccaa 33070646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 62 - 209
Target Start/End: Complemental strand, 40881279 - 40881133
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||| ||||| |||||||  |||| |  || |||||||||  ||||||||||| |||  |||||||||||||||||||||||||||| || |  |    
T  40881279 gtgttggtggtacacggttagatatgatgaacttcttttatccaacggtcttcttttttagggatttaaaattaataaaatatgaccaaattgatgacaa 40881180  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggacca 209  Q
    ||| |||||| || || ||  |||||||| |||||||||| |||||||    
T  40881179 aaataaagat-aaggaccaaattgaaacggttaatagttaagggacca 40881133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 202
Target Start/End: Original strand, 16957327 - 16957473
Alignment:
Q  56 aattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaa 155  Q
    |||||||||||||||||||||||||| |||  | | |||||||||||| ||  |||||| |||| ||  | ||| ||||||| |||||||||||| | |     
T  16957327 aattatgtgttggtgatacaccgttacatcttacgaatctcctttatctaacggtcttcatttttagccgattagaattaatgaaatatgaccaattgat 16957426  T
Q  156 taattaaaacaaagataaacgatcattttgaaacgtttaatagttag 202  Q
    | |  |||||||| ||||| || ||  ||||||||||||||||||||    
T  16957427 tgaggaaaacaaaaataaaggaccaaattgaaacgtttaatagttag 16957473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 206
Target Start/End: Complemental strand, 29408435 - 29408291
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttcttttt-aaggagtttaaaattaataaaatatgaccaaattaataatt 160  Q
    |||||||||||||||||||||||| ||| || ||| |||||||||  |||| |||||| || ||| |||||||||| |||||||||| ||||| |  |      
T  29408435 gtgttggtgatacaccgttagatctgatagacctcatttatccaatggtctactttttaaatgag-ttaaaattaacaaaatatgactaaatttactaac 29408337  T
Q  161 aaaacaaagataaacgatcattttgaaacgtttaatagttagggga 206  Q
    |||||| ||||||| || || |||||||| ||| ||||||| ||||    
T  29408336 aaaacacagataaatgaccaatttgaaacattttatagttaaggga 29408291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 153
Target Start/End: Original strand, 29409156 - 29409256
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaag-gagtttaaaattaataaaatatgaccaaa 151  Q
    |||||||| |||||||| |||||| |||||||| ||| |||||| |||||||||  |||| ||||||||  ||||| |||||||| ||||||||||||||    
T  29409156 ataaattaggtgttggttatacactgttagatctgatagatctcatttatccaacggtctcctttttaaatgagtt-aaaattaacaaaatatgaccaaa 29409254  T
Q  152 tt 153  Q
    ||    
T  29409255 tt 29409256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 56 - 212
Target Start/End: Complemental strand, 46197051 - 46196895
Alignment:
Q  56 aattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaa 155  Q
    ||||| |||||| |||| ||||||||||||  ||||| || || ||| |||  |||| ||||| ||| |  ||||||||||| ||||| |||||| | |     
T  46197051 aattaggtgttgatgatgcaccgttagatcttatggaccttctatattcaatggtctccttttcaagcaaattaaaattaatgaaataggaccaattgat 46196952  T
Q  156 taattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaatt 212  Q
    | |  ||||||||||||||||| ||  || |||| ||||||||||||||||||||||    
T  46196951 tgaggaaaacaaagataaacgaccaaattaaaacatttaatagttaggggaccaatt 46196895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 36396011 - 36395910
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggag-tttaaaattaataaaatatgaccaaa 151  Q
    ||||||||  |||||||||||||| |||| ||| ||||||||||||||||||||  ||||| ||||| | |||  |||||||||| |||||| ||| |||    
T  36396011 ataaattagatgttggtgatacactgttaaatctgatggatctcctttatccaaccgtctttttttttaagagagttaaaattaacaaaataggactaaa 36395912  T
Q  152 tt 153  Q
    ||    
T  36395911 tt 36395910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 25743024 - 25742928
Alignment:
Q  57 attatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaatt 153  Q
    |||| ||||| |||||||||  ||||||  |||||| || |||||||||| |||||||||||| ||   ||||||||||||||||||  ||||||||    
T  25743024 attaggtgtttgtgatacacgattagatttgatggaccttctttatccaactgtcttctttttgagagatttaaaattaataaaatagaaccaaatt 25742928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 29344352 - 29344241
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| |||||||  |||| |  ||||||||||||  ||||||||||| | |  ||| ||||||| |||||| ||||||||  || |  |    
T  29344352 gtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaaaaaaataggaccaaatcgatgacga 29344253  T
Q  162 aaacaaagataa 173  Q
    ||||||||||||    
T  29344252 aaacaaagataa 29344241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 19218893 - 19218965
Alignment:
Q  47 aataatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttcttttt 119  Q
    ||||| |||||||| ||||||||||||||| |||| |||  ||||| ||| |||||||||  |||| ||||||    
T  19218893 aataaaataaattaggtgttggtgatacactgttaaatctcatggacctcttttatccaacggtctccttttt 19218965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 50 - 244
Target Start/End: Original strand, 41767079 - 41767272
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacca 149  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||  ||||||||||||||  ||||||||||||||||||| |||||    
T  41767079 aatataaattatgtgttggtgatacaccgttagatccgatggacctccttaatccaacagtcttctttttaagaggtttaaaattaataaaataggacca 41767178  T
Q  150 aattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcgnnnnnnnngaattaagttaagggaccaaat 244  Q
    || |||| | ||||| ||||||||  || ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  41767179 aaataatgactaaaataaagataagggaccattttgaaacgtttaatagttaggggaccaattcg-aaataaagaattaagttaagggaccaaat 41767272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 50 - 214
Target Start/End: Original strand, 43415883 - 43416047
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacca 149  Q
    ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||  ||| |    
T  43415883 aatataaattacgtgttgctgatacaccgtaagatccgatggatctcctttatccaacagtcttctttttaaggggtttaaaattaataaaatcggacta 43415982  T
Q  150 aattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcg 214  Q
    || | || | ||||||||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  43415983 aaatgatgactaaaacaaagataaaagaccattttgaaacgtttaatagttaagggaccaattcg 43416047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 50 - 214
Target Start/End: Original strand, 44770529 - 44770693
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacca 149  Q
    |||||||||||||||| ||| |||||| |||||||||||| || ||| |||||||||  ||||||||||||||| ||||||||||||||||||| || ||    
T  44770529 aatataaattatgtgtcggttatacactgttagatccgatagacctcatttatccaacggtcttctttttaaggggtttaaaattaataaaataggatca 44770628  T
Q  150 aattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcg 214  Q
    |||| || | |||||||||| |||| || |||||| |||| |||||||||||| |||||||||||    
T  44770629 aattgatgactaaaacaaagctaaaggaccattttaaaacatttaatagttagaggaccaattcg 44770693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 52 - 212
Target Start/End: Complemental strand, 41766321 - 41766161
Alignment:
Q  52 tataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaa 151  Q
    ||||||||| |||||| ||||| ||| |||||| |||||||||||||| ||||||  ||||||||||||| |||||||||||||||||||||  ||||||    
T  41766321 tataaattacgtgttgatgatataccattagattcgatggatctccttaatccaacggtcttctttttaaagagtttaaaattaataaaatagaaccaaa 41766222  T
Q  152 ttaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaatt 212  Q
       || | ||||||||||||||| || |||||| |||| |||||||||||||| |||||||    
T  41766221 actatgactaaaacaaagataaatgaccattttaaaacctttaatagttagggtaccaatt 41766161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 47 - 188
Target Start/End: Complemental strand, 44769882 - 44769742
Alignment:
Q  47 aataatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatga 146  Q
    |||||||||||||||||||||||||||||| |||||||  |||||| |||||| ||||||  |||||| ||||||||  |||||||||||||||||||||    
T  44769882 aataatataaattatgtgttggtgatacactgttagatatgatggacctcctt-atccaacagtcttcattttaagggttttaaaattaataaaatatga 44769784  T
Q  147 ccaaattaataattaaaacaaagataaacgatcattttgaaa 188  Q
     |||||| || | ||||||||||||||| || ||| ||||||    
T  44769783 tcaaattgatgactaaaacaaagataaatgaccatgttgaaa 44769742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 43414774 - 43414682
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaat 142  Q
    |||||||||||||||| ||||||||||||||||||| |||| | |||||||||||||  |||||||||||||| | |||||||||||||||||    
T  43414774 aatataaattatgtgtcggtgatacaccgttagatctgatgcacctcctttatccaacggtcttctttttaagaaatttaaaattaataaaat 43414682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 62 - 209
Target Start/End: Complemental strand, 9189582 - 9189436
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||| ||||| |||||||  |||| |  ||||||||||||  ||||||||||| |||  |||||||||||||||||||||||||||| || |       
T  9189582 gtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttcttttttagggatttaaaattaataaaatatgaccaaattgatgacag 9189483  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggacca 209  Q
    |||||||||| || || ||  ||||||||||||||||||| |||||||    
T  9189482 aaacaaagat-aaggaccaaattgaaacgtttaatagttaagggacca 9189436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 43414498 - 43414418
Alignment:
Q  134 taataaaatatgaccaaattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcg 214  Q
    ||||||||||  |||||||| || || |||||| ||||||| || ||||||||||||||||||||||||||||||||||||    
T  43414498 taataaaatagtaccaaattgatgatgaaaacatagataaaggaccattttgaaacgtttaatagttaggggaccaattcg 43414418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 53 - 152
Target Start/End: Original strand, 12820017 - 12820116
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaat 152  Q
    |||||||| ||||||||||||||| |||||||  |||| | |||||||||||||  ||||||||||| ||   |||||||||||||||||| ||||||||    
T  12820017 ataaattaggtgttggtgatacacagttagatatgatgaacctcctttatccaacggtcttctttttgagagatttaaaattaataaaataggaccaaat 12820116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 53 - 210
Target Start/End: Complemental strand, 12818951 - 12818795
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaat 152  Q
    |||||||| ||||||||||||||  |||||||  |||| | |||||||||||||  ||||| ||||| ||   |||||||||||||||||| || |||||    
T  12818951 ataaattaggtgttggtgatacagagttagatatgatgaacctcctttatccaacggtcttatttttgagagatttaaaattaataaaataggatcaaat 12818852  T
Q  153 taataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
      ||||  ||||||||||| || || ||  |||||| |||||||||||| ||||||||    
T  12818851 cgataacgaaaacaaagat-aatgaccaaattgaaatgtttaatagttaagggaccaa 12818795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 210
Target Start/End: Original strand, 11080950 - 11081107
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaat 152  Q
    |||||| | ||||||||||||||| |||||||| ||| || ||| |||||||||| |||| ||||||   ||| ||||||| ||| ||||| ||||||||    
T  11080950 ataaatcaggtgttggtgatacacagttagatctgatagacctcatttatccaaaggtctccttttttttgaggttaaaatgaatgaaataggaccaaat 11081049  T
Q  153 t-aataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
    | ||| ||  |||  |||||||| || || |||| |||||||||||||||| |||||||    
T  11081050 tgaatgatggaaa-gaagataaaggaccaatttggaacgtttaatagttagaggaccaa 11081107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 207
Target Start/End: Original strand, 9190370 - 9190514
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||| ||||| |||||||  |||| |  ||||||||||||  ||||||||||| |||  |||||||||||||||||  ||||||||  || | ||    
T  9190370 gtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttcttttttagggatttaaaattaataaaattggaccaaatcgatgacta 9190469  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggac 207  Q
    |||||||||| || || ||  ||||||| ||||||||||| |||||    
T  9190470 aaacaaagat-aaggaccaaattgaaacatttaatagttaagggac 9190514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 20066276 - 20066176
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtct-tctttttaaggagtttaaaattaataaaatatgaccaaa 151  Q
    |||||||| ||||||||||||||| |||| ||| |||||||||| |||||||||  |||| | ||||||||||| ||||||||||  ||||| |||||||    
T  20066276 ataaattaggtgttggtgatacactgttaaatctgatggatctcttttatccaacggtctctttttttaaggag-ttaaaattaaggaaataggaccaaa 20066178  T
Q  152 tt 153  Q
    ||    
T  20066177 tt 20066176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 62 - 210
Target Start/End: Complemental strand, 16346287 - 16346140
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| |||||||  |||| |  ||||||||||||  ||||||||||| | |  ||| |||||||||||||| ||||||||  || |  |    
T  16346287 gtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaataaaataggaccaaatcgatgacga 16346188  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
     ||||||||| || || ||  ||||||||||||||||||| ||||||||    
T  16346187 taacaaagat-aaggaccaaattgaaacgtttaatagttaagggaccaa 16346140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 4534222 - 4534111
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| || ||||  |||| |  ||||||||||||  |||| |||||| |||  |||||||||||||||||| ||||||||| || |  |    
T  4534222 gtgttggtgatacacggtaagatatgatgaacttcctttatccaatggtctacttttttagggatttaaaattaataaaataggaccaaattgatgacga 4534123  T
Q  162 aaacaaagataa 173  Q
    ||||||||||||    
T  4534122 aaacaaagataa 4534111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 201
Target Start/End: Original strand, 22914118 - 22914256
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| |||||||  |||| |  ||||||||||||  ||||||||||| | |  ||| |||||||||||||| ||||||||  || |  |    
T  22914118 gtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaataaaataggaccaaatcgatgacga 22914217  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagtta 201  Q
     ||||||||| || |||||  |||||||||||||||||||    
T  22914218 taacaaagat-aaggatcaaattgaaacgtttaatagtta 22914256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 4534957 - 4535068
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| |||||||  |||| |  ||||||||||||  ||||||||||| | |  ||| |||||||||||||| || |||||| || |  |    
T  4534957 gtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaataaaataggatcaaattgatgacga 4535056  T
Q  162 aaacaaagataa 173  Q
    ||||||||||||    
T  4535057 aaacaaagataa 4535068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 206
Target Start/End: Original strand, 35462907 - 35463060
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttcttttt-aaggagtttaaaattaataaaatatgaccaaa 151  Q
    |||||||| ||||||||||||||| |||||||| ||| || ||| |||||||||   ||| |||||| || ||| |||||||||| |||||| |||||||    
T  35462907 ataaattaggtgttggtgatacactgttagatcagatagacctcatttatccaacgatctcctttttaaatgag-ttaaaattaacaaaataggaccaaa 35463005  T
Q  152 ttaataattaaaacaaagataaacgatcattttgaaacgtttaatagttagggga 206  Q
    || |  |  |||||| ||||||| || || ||||| || ||| ||||||| ||||    
T  35463006 tttactaacaaaacacagataaaggaccaatttgagacattttatagttaaggga 35463060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 210
Target Start/End: Original strand, 23768413 - 23768560
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| || ||||  |||| |  |||| |||||||  |||| |||||| ||   |||||||||||||||||| ||||||||| || |  |    
T  23768413 gtgttggtgatacacggtaagatatgatgaaattcctgtatccaatggtctacttttttagagatttaaaattaataaaataggaccaaattgatgacga 23768512  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
    |||||||||| || || || ||| |||| ||||||||| | ||||||||    
T  23768513 aaacaaagat-aaggaccaatttaaaacatttaatagtgaagggaccaa 23768560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 206
Target Start/End: Complemental strand, 22913347 - 22913237
Alignment:
Q  95 tcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataattaaaacaaagataaacgatcattttgaaacgttta 194  Q
    ||||||||||||   ||| |||||| |||  |||||||||||||||||| ||||||||| || |  ||||||||||| || |||||  ||||||| ||||    
T  22913347 tcctttatccaatgatctacttttttagggatttaaaattaataaaataggaccaaattgatgacgaaaacaaagat-aaggatcaaattgaaacattta 22913249  T
Q  195 atagttagggga 206  Q
     |||||| ||||    
T  22913248 ctagttaaggga 22913237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 8e-53; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 51 - 212
Target Start/End: Original strand, 13562212 - 13562373
Alignment:
Q  51 atataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaa 150  Q
    |||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||| ||||||    
T  13562212 atataaattaggtgttggtgatacactgttagatctgatggatctcctttatccaacagtcttcttttttaggagtttaaaattaataaaataggaccaa 13562311  T
Q  151 attaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaatt 212  Q
    ||| || | ||||| ||||||||| || ||||||||||||||||||||||| ||||||||||    
T  13562312 atttatgactaaaataaagataaaggaccattttgaaacgtttaatagttaagggaccaatt 13562373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 51 - 214
Target Start/End: Complemental strand, 13561478 - 13561315
Alignment:
Q  51 atataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaa 150  Q
    |||||||||| |||||||||||||||  ||||||| |||||| || ||||||||||   |||||||||| ||||||||||||||||||||||| ||||||    
T  13561478 atataaattaggtgttggtgatacactattagatctgatggaccttctttatccaacgatcttctttttgaggagtttaaaattaataaaataggaccaa 13561379  T
Q  151 attaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcg 214  Q
    ||| || | || |||||||||||| || ||||||||||||||||||||||| | ||||||||||    
T  13561378 attgatgactataacaaagataaaagaccattttgaaacgtttaatagttaagagaccaattcg 13561315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 68 - 212
Target Start/End: Original strand, 25439040 - 25439184
Alignment:
Q  68 gtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataattaaaacaa 167  Q
    |||||||| ||||| ||| |||| | |||||||||||||  ||||||||||||||  ||||||||||||||||||  ||||||||| ||||| |||||||    
T  25439040 gtgatacaacgttaaatctgatgaacctcctttatccaacggtcttctttttaagaggtttaaaattaataaaattggaccaaattgataatgaaaacaa 25439139  T
Q  168 agataaacgatcattttgaaacgtttaatagttaggggaccaatt 212  Q
    ||||||| || ||  ||||||||||| ||| |||  |||||||||    
T  25439140 agataaaagaccaaattgaaacgttttataattaaaggaccaatt 25439184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 50 - 213
Target Start/End: Complemental strand, 10673810 - 10673647
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacca 149  Q
    ||||||||||| ||| |||||||||||| ||||||  |||||| ||||||||| |||  ||||||||||| |   ||||||||||||||||||| ||| |    
T  10673810 aatataaattaggtggtggtgatacacctttagatatgatggacctcctttattcaacggtcttctttttgaaaggtttaaaattaataaaataggacta 10673711  T
Q  150 aattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattc 213  Q
    |||| || |  |||||||| ||||| || ||  |||||||||||| |||||| |||||||||||    
T  10673710 aattgatgacgaaaacaaacataaaggaccaaattgaaacgtttattagttaagggaccaattc 10673647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 62 - 210
Target Start/End: Complemental strand, 14174291 - 14174144
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| |||||||  |||| |  |||||||||||| |||||||||||||||   |||||||||||||||||| ||| ||||  || |  |    
T  14174291 gtgttggtgatacacggttagatatgatgaacttcctttatccaactgtcttctttttaagagatttaaaattaataaaataggacaaaatcgatgacga 14174192  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
    |||||||||| || |||||  |||||| ||||||||||||| |||||||    
T  14174191 aaacaaagat-aaggatcaaattgaaaagtttaatagttagtggaccaa 14174144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 62 - 210
Target Start/End: Complemental strand, 14178827 - 14178680
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| |||||||  |||| |  |||||||||||| |||||||||||||||   |||||||||||||||||| ||| ||||  || |  |    
T  14178827 gtgttggtgatacacggttagatatgatgaacttcctttatccaactgtcttctttttaagagatttaaaattaataaaataggacaaaatcgatgacga 14178728  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
    |||||||||| || |||||  |||||| ||||||||||||| |||||||    
T  14178727 aaacaaagat-aaggatcaaattgaaaagtttaatagttagtggaccaa 14178680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 214
Target Start/End: Complemental strand, 25437984 - 25437820
Alignment:
Q  49 taatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacc 148  Q
    |||||||||||| | |||||||||||||| |||||| | ||||||||| | ||| |||  ||||||||||| ||  ||||||||||||||||||| || |    
T  25437984 taatataaattaggcgttggtgatacaccattagatgcaatggatctcttatattcaacggtcttctttttgagatgtttaaaattaataaaataggatc 25437885  T
Q  149 aaattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcg 214  Q
    | ||| ||    |||||||||||||| || ||  ||||||||||||||||||| || | |||||||    
T  25437884 agattgatggcgaaaacaaagataaa-gaccaaattgaaacgtttaatagttaaggaatcaattcg 25437820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 210
Target Start/End: Original strand, 1757422 - 1757569
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| |||||||  |||| |  | ||||||||||  ||||||||||| |||  |||||||||||||||||| ||||||||  |  |  |    
T  1757422 gtgttggtgatacacggttagatatgatgaacttactttatccaacggtcttctttttgagggatttaaaattaataaaataggaccaaatcgacgacga 1757521  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
    |||||||||| || || ||  ||||||||||||||||||| ||||||||    
T  1757522 aaacaaagat-aaggaccaaattgaaacgtttaatagttaagggaccaa 1757569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 62 - 201
Target Start/End: Original strand, 11724224 - 11724362
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||| ||||| |||||||  |||| |  ||||||||||||  ||||||||||| |||  |||||||| |||||||||||| |||||| || |  |    
T  11724224 gtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttcttttttagggatttaaaatcaataaaatatgatcaaattgatgacga 11724323  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagtta 201  Q
    |||||||||| || || ||  |||||||||||||||||||    
T  11724324 aaacaaagat-aaggaccaaattgaaacgtttaatagtta 11724362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 49 - 201
Target Start/End: Complemental strand, 24317248 - 24317099
Alignment:
Q  49 taatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggag-tttaaaattaataaaatatgac 147  Q
    |||||||||||| |||||| |||||||||||||||| ||||||||||| |||||||||  ||||  ||||||  ||| ||||||||| |||||| | ||     
T  24317248 taatataaattaggtgttgatgatacaccgttagatacgatggatctcttttatccaacggtct--ttttta--gagttttaaaattgataaaacaggat 24317153  T
Q  148 caaattaataattaaaacaaagataaacgatcattttgaaacgtttaatagtta 201  Q
    |||||  ||    |||||||||||||| || ||  |||||||||||||||||||    
T  24317152 caaatcgatggcgaaaacaaagataaatgaccaaattgaaacgtttaatagtta 24317099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 210
Target Start/End: Complemental strand, 682463 - 682306
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaat 152  Q
    |||||| | ||||||||||||||| | |||||| ||| || ||| |||||||||  |||| ||||||  |  | ||||||| ||||||||| ||||||||    
T  682463 ataaatcaagtgttggtgatacacagctagatctgatagacctcatttatccaacggtctcctttttttgtggattaaaatgaataaaataagaccaaat 682364  T
Q  153 t-aataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
    | ||| ||  |||  |||||||| || || |||| |||||||||||||||| |||||||    
T  682363 tgaatgatggaaa-gaagataaatgaccaatttggaacgtttaatagttagaggaccaa 682306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 150
Target Start/End: Complemental strand, 1948913 - 1948819
Alignment:
Q  56 aattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaa 150  Q
    |||||||||||||||||||| ||||| |||  ||| ||||| |||||||||  ||||||||||| || || ||| ||||||| | ||| ||||||    
T  1948913 aattatgtgttggtgatacatcgttacatcttatgaatctcttttatccaacggtcttcttttttagtagattagaattaatgacataggaccaa 1948819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 210
Target Start/End: Original strand, 27108102 - 27108249
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| |||||||  |||| |  ||||||||||||   |||||||||| | |  ||| |||||||||||||| ||| ||||  || || |    
T  27108102 gtgttggtgatacacggttagatatgatgaacttcctttatccaacgatcttcttttttatggatttcaaattaataaaataggactaaatcgatgatga 27108201  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
    |||||||||| || |  ||  || |||||||||||||||| ||||||||    
T  27108202 aaacaaagat-aaggtccaaattaaaacgtttaatagttaagggaccaa 27108249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 210
Target Start/End: Original strand, 27149899 - 27150046
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| |||||||  |||| |  ||||||||||||   |||||||||| | |  ||| |||||||||||||| ||| ||||  || || |    
T  27149899 gtgttggtgatacacggttagatatgatgaacttcctttatccaacgatcttcttttttatggatttcaaattaataaaataggactaaatcgatgatga 27149998  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
    |||||||||| || |  ||  || |||||||||||||||| ||||||||    
T  27149999 aaacaaagat-aaggtccaaattaaaacgtttaatagttaagggaccaa 27150046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 244
Target Start/End: Original strand, 24318041 - 24318172
Alignment:
Q  112 ttctttttaaggagtttaaaattaataaaatatgaccaaattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaat 211  Q
    |||||||||||  |||| |||||||||||||  || |||||| || |  |||||||||||||| || ||  || ||| |||||||| ||| |||||||||    
T  24318041 ttctttttaagaggtttgaaattaataaaatgggatcaaattgatgacgaaaacaaagataaaggaccaaattaaaaagtttaataattaagggaccaat 24318140  T
Q  212 tcgnnnnnnnngaattaagttaagggaccaaat 244  Q
    |||        ||||||||||||||||||||||    
T  24318141 tcg-aaaaaaagaattaagttaagggaccaaat 24318172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 174
Target Start/End: Complemental strand, 1692261 - 1692150
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| || ||||  |||| |  ||| ||||||||  |||| |||||| |||  |||||||||||| ||||| ||||||||| || |  |    
T  1692261 gtgttggtgatacacggtaagatatgatgaacttcccttatccaatggtctacttttttagggatttaaaattaat-aaataggaccaaattgatgacga 1692163  T
Q  162 aaacaaagataaa 174  Q
    |||||||||||||    
T  1692162 aaacaaagataaa 1692150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 27107369 - 27107258
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttc-tttttaaggagtttaaaattaataaaatatgaccaaattaataatt 160  Q
    ||||||||||||||| || ||||  |||| |  || |||||||||  |||| | |||||| ||| |||||||||||||||||| ||||||||| || |      
T  27107369 gtgttggtgatacacggtaagatatgatgaacttcttttatccaatggtctacatttttatgga-tttaaaattaataaaataggaccaaattgatgacg 27107271  T
Q  161 aaaacaaagataa 173  Q
    |||||||||||||    
T  27107270 aaaacaaagataa 27107258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 27149175 - 27149064
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttc-tttttaaggagtttaaaattaataaaatatgaccaaattaataatt 160  Q
    ||||||||||||||| || ||||  |||| |  || |||||||||  |||| | |||||| ||| |||||||||||||||||| ||||||||| || |      
T  27149175 gtgttggtgatacacggtaagatatgatgaacttcttttatccaatggtctacatttttatgga-tttaaaattaataaaataggaccaaattgatgacg 27149077  T
Q  161 aaaacaaagataa 173  Q
    |||||||||||||    
T  27149076 aaaacaaagataa 27149064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 50 - 212
Target Start/End: Complemental strand, 10330906 - 10330745
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacca 149  Q
    |||| |||||| ||||| ||||||||| |||||||| ||| || ||| |||||||||  ||||||||||||||| ||||||||||||||||||| |||||    
T  10330906 aataaaaattacgtgtttgtgatacactgttagatctgatagacctc-tttatccaatagtcttctttttaaggggtttaaaattaataaaataggacca 10330808  T
Q  150 aattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaatt 212  Q
    |||||||   ||||||||||||||| || |||||||||||||||||| |||||||||||||||    
T  10330807 aattaatggctaaaacaaagataaatgaccattttgaaacgtttaatcgttaggggaccaatt 10330745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 51 - 201
Target Start/End: Complemental strand, 38593230 - 38593081
Alignment:
Q  51 atataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaa 150  Q
    |||||||||| |||||||||||||||  ||||||| |||||||||| |||||||||  ||||||||||| ||||||||||||||||||||||| ||||||    
T  38593230 atataaattaagtgttggtgatacactattagatctgatggatctc-tttatccaacggtcttctttttgaggagtttaaaattaataaaataggaccaa 38593132  T
Q  151 attaataattaaaacaaagataaacgatcattttgaaacgtttaatagtta 201  Q
    ||| || | ||||||||||| ||| || |||||||||||||||||||||||    
T  38593131 attgatgactaaaacaaagacaaaggaccattttgaaacgtttaatagtta 38593081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 51 - 201
Target Start/End: Complemental strand, 38596826 - 38596677
Alignment:
Q  51 atataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaa 150  Q
    |||||||||| |||||||||||||||  ||||||| |||||||||| |||||||||  ||||||||||| ||||||||||||||||||||||| ||||||    
T  38596826 atataaattaagtgttggtgatacactattagatctgatggatctc-tttatccaacggtcttctttttgaggagtttaaaattaataaaataggaccaa 38596728  T
Q  151 attaataattaaaacaaagataaacgatcattttgaaacgtttaatagtta 201  Q
    ||| || | ||||||||||| ||| || |||||||||||||||||||||||    
T  38596727 attgatgactaaaacaaagacaaaggaccattttgaaacgtttaatagtta 38596677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 57 - 212
Target Start/End: Original strand, 371889 - 372044
Alignment:
Q  57 attatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaat 156  Q
    |||| ||||| |||||||||||||||||| |||| | |||||||||||||  ||| ||||||| ||  ||||||||||||||||||| || |||||| ||    
T  371889 attaggtgttagtgatacaccgttagatctgatgaacctcctttatccaacagtcatctttttgagaggtttaaaattaataaaataggatcaaattgat 371988  T
Q  157 aattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaatt 212  Q
     || |||||||||||||| |||||  ||||||||||||||||||||||||| ||||    
T  371989 gatgaaaacaaagataaaggatcaaattgaaacgtttaatagttaggggactaatt 372044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 51 - 212
Target Start/End: Original strand, 38593967 - 38594124
Alignment:
Q  51 atataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaa 150  Q
    |||||||||| |||||||||||||||    ||||| |||||| |||||||||||||   |||||||||| |  |||||||||||||||||||| ||||||    
T  38593967 atataaattaggtgttggtgatacac----agatctgatggacctcctttatccaacaatcttctttttgataagtttaaaattaataaaataggaccaa 38594062  T
Q  151 attaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaatt 212  Q
    ||| ||   ||||| ||||||||| || |||||| |||||||||||||||| ||||| ||||    
T  38594063 atttatgtctaaaataaagataaatgaccattttaaaacgtttaatagttaagggactaatt 38594124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 51 - 212
Target Start/End: Original strand, 38597563 - 38597720
Alignment:
Q  51 atataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaa 150  Q
    |||||||||| |||||||||||||||    ||||| |||||| |||||||||||||   |||||||||| |  |||||||||||||||||||| ||||||    
T  38597563 atataaattaggtgttggtgatacac----agatctgatggacctcctttatccaacaatcttctttttgataagtttaaaattaataaaataggaccaa 38597658  T
Q  151 attaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaatt 212  Q
    ||| ||   ||||| ||||||||| || |||||| |||||||||||||||| ||||| ||||    
T  38597659 atttatgtctaaaataaagataaatgaccattttaaaacgtttaatagttaagggactaatt 38597720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 56 - 212
Target Start/End: Complemental strand, 370962 - 370806
Alignment:
Q  56 aattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaa 155  Q
    ||||| |||||||||||||||| ||||||  ||| || ||| |||||||||  ||||| ||||| ||  ||||||||| ||||||||| || |||||| |    
T  370962 aattaggtgttggtgatacaccattagatttgatagacctcatttatccaacggtcttattttttagaggtttaaaatcaataaaataggatcaaattga 370863  T
Q  156 taattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaatt 212  Q
    | || |||||||||||||| || || ||| ||  |||||||| |||||| |||||||    
T  370862 tgataaaaacaaagataaatgaccaatttaaagtgtttaatatttagggaaccaatt 370806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 40542433 - 40542333
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaat 152  Q
    |||||||| || ||| ||||||||||||| |||||||||| |||||||||| ||  |||| |||||| |||   ||||||||||| ||||| ||||||||    
T  40542433 ataaattaggtattgatgatacaccgttaaatccgatggacctcctttatctaacggtctccttttttagggagttaaaattaatgaaataggaccaaat 40542334  T
Q  153 t 153  Q
    |    
T  40542333 t 40542333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 12364388 - 12364288
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaat 152  Q
    |||||||||||||||||||||||| |||||||| ||| || ||| |||||||||  |||  ||||||  || | ||||||| ||| ||||| ||||||||    
T  12364388 ataaattatgtgttggtgatacacagttagatctgatagacctcatttatccaatggtcccctttttttgggggttaaaataaattaaataggaccaaat 12364289  T
Q  153 t 153  Q
    |    
T  12364288 t 12364288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 206
Target Start/End: Original strand, 20630599 - 20630742
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||| ||||| |||||||  |||| |  ||||||||||||  || |||||||| |||  |||||||||||||||||  ||||||||  || |  |    
T  20630599 gtgttggtggtacacggttagatatgatgaacttcctttatccaacggtattcttttttagggatttaaaattaataaaattggaccaaatcgatgacga 20630698  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttagggga 206  Q
    |||||||||| || || ||  ||||||||||||||||||| ||||    
T  20630699 aaacaaagat-aaggaccaaattgaaacgtttaatagttaaggga 20630742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 211
Target Start/End: Complemental strand, 30178733 - 30178585
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||| ||| || ||||  |||| |  ||||||||||||  |||| |||||| |||  |||||||||||||||||| || |||||| || |  |    
T  30178733 gtgttggtgatgcactgtaagatatgatgaacttcctttatccaatggtctacttttttaggtatttaaaattaataaaataggatcaaattgatgacga 30178634  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaat 211  Q
    |||||||||| ||||| ||   |||||| ||| ||||||| |||||||||    
T  30178633 aaacaaagat-aacgaccaaactgaaacatttgatagttaagggaccaat 30178585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 210
Target Start/End: Original strand, 33553296 - 33553440
Alignment:
Q  65 ttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataattaaaa 164  Q
    |||||||||||| |||||||  ||||    |||||||| |||  ||||||||||| ||   |||||||||||||||||| ||||||||  || |  ||||    
T  33553296 ttggtgatacacggttagatatgatgagcttcctttattcaacggtcttctttttgagagatttaaaattaataaaataggaccaaatcgatgacgaaaa 33553395  T
Q  165 caaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
    ||||||| || || ||  ||||||||||||||||||| | ||||||    
T  33553396 caaagat-aaggaccaaattgaaacgtttaatagttaagagaccaa 33553440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 174
Target Start/End: Original strand, 30179480 - 30179592
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| |||||||  |||| |  ||||||||||||  ||||| ||||| | |  ||| |||||||||||||| ||||||||  || |  |    
T  30179480 gtgttggtgatacacggttagatatgatgaacttcctttatccaacggtctttttttttatggatttcaaattaataaaataggaccaaatcgatgacga 30179579  T
Q  162 aaacaaagataaa 174  Q
    |||||||||||||    
T  30179580 aaacaaagataaa 30179592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 153
Target Start/End: Original strand, 12365936 - 12366034
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaat 152  Q
    |||||| | ||||||||||||||| |||| ||| ||| |||||| |||||||||  |||| | ||||  || | ||||||| ||||||||| ||||||||    
T  12365936 ataaatcaggtgttggtgatacacagttatatctgatagatctcatttatccaacggtctccatttt--gggggttaaaatgaataaaataggaccaaat 12366033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 51 - 202
Target Start/End: Complemental strand, 18655647 - 18655496
Alignment:
Q  51 atataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaa 150  Q
    ||||||||||||||||||| ||||||  |||||||  ||||| |||||||||||||  |||||||||||||||| |||||||||||||||| | ||| ||    
T  18655647 atataaattatgtgttggttatacactattagatctaatggacctcctttatccaacggtcttctttttaaggattttaaaattaataaaaaaggactaa 18655548  T
Q  151 attaataattaaaacaaagataaacgatcattttgaaacgtttaatagttag 202  Q
    ||| || |||||||||||||||||  | ||||||||||||||||||||||||    
T  18655547 attgatcattaaaacaaagataaataaacattttgaaacgtttaatagttag 18655496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 50 - 153
Target Start/End: Original strand, 18656614 - 18656717
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacca 149  Q
    |||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||| || ||    
T  18656614 aatataaattatgtgttgatgatacatcgttagatccgatggacctcctttatccaacagtcttctttttaaggagtttaaaattaataaaataggatca 18656713  T
Q  150 aatt 153  Q
    ||||    
T  18656714 aatt 18656717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 49 - 214
Target Start/End: Complemental strand, 9850171 - 9850006
Alignment:
Q  49 taatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacc 148  Q
    |||| ||||||||||||||||||||||  ||||||||| || || ||||||| | |||  |||||||||||   |  |||||||||||||||||| || |    
T  9850171 taatttaaattatgtgttggtgatacatggttagatccaattgacctccttttttcaacggtcttctttttgttggatttaaaattaataaaataggatc 9850072  T
Q  149 aaattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaattcg 214  Q
    ||||| || | ||||||||| ||||| || |||||||||||||| |||||||| ||||||||||||    
T  9850071 aaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttatgggaccaattcg 9850006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 210
Target Start/End: Complemental strand, 9822844 - 9822692
Alignment:
Q  57 attatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaat 156  Q
    |||| ||||||| ||||||| |||||||  |||| | |||||||||||||  ||||||||||| |||  ||||||||||||||||||  ||||||| |||    
T  9822844 attaggtgttggggatacacggttagatatgatgaacctcctttatccaacagtcttcttttttagggatttaaaattaataaaatagaaccaaatcaat 9822745  T
Q  157 aattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
     |  ||||||||||| || || ||  ||||||||||||||||||| | ||||||    
T  9822744 gacgaaaacaaagat-aaggaccaaattgaaacgtttaatagttaagtgaccaa 9822692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 209
Target Start/End: Original strand, 43808449 - 43808595
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||| ||||| |||||||  |||| |  ||||||||| ||  ||||||||||| |||  |||||||||||||||||||||||||||  || |  |    
T  43808449 gtgttggtggtacacggttagatatgatgaacttcctttatctaacggtcttcttttttagggatttaaaattaataaaatatgaccaaatcgatgacga 43808548  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggacca 209  Q
    |||||||||| || || ||  ||||||||||||||||||| |||||||    
T  43808549 aaacaaagat-aatgaccaaattgaaacgtttaatagttaagggacca 43808595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 210
Target Start/End: Complemental strand, 49618629 - 49618472
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaat 152  Q
    |||||| | ||||||||||||| | |||||||| ||| || ||| |||||||||  |||| ||||||  || | ||||||| ||||||||||||||||||    
T  49618629 ataaatcaagtgttggtgatactcagttagatctgatagacctcatttatccaacggtctcctttttttgggggttaaaatgaataaaatatgaccaaat 49618530  T
Q  153 t-aataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
    | ||| ||  |||  ||||||||  | || ||| |||||||||||||||||||||||||    
T  49618529 tgaatgatggaaa-gaagataaaacaccaatttaaaacgtttaatagttaggggaccaa 49618472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 210
Target Start/End: Original strand, 52439204 - 52439360
Alignment:
Q  54 taaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaatt 153  Q
    ||||||| ||||||||||||||| |||||||| ||| ||  || |||||||||   ||| ||||||| ||   ||||||| |||||||||  ||||||||    
T  52439204 taaattaggtgttggtgatacacagttagatctgatagacttcatttatccaacgatctcctttttatgggtgttaaaatgaataaaatagaaccaaatt 52439303  T
Q  154 -aataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
     ||| ||  ||| || |||||| ||||| ||||||||||||||||||||| |||||||    
T  52439304 gaatgatggaaagaa-gataaaggatcaatttgaaacgtttaatagttagaggaccaa 52439360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 62 - 210
Target Start/End: Original strand, 21246403 - 21246550
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| |||||||  |||| |  ||||||||||||  ||||||||||| | |  ||| |||||||||||||| ||||||||  || |  |    
T  21246403 gtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggattttaaattaataaaataggaccaaatcgatgacga 21246502  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
    |||||||||| || || |   ||||||||||||||||||| ||||||||    
T  21246503 aaacaaagat-aatgaccgaattgaaacgtttaatagttaagggaccaa 21246550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 153
Target Start/End: Original strand, 40722951 - 40723051
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtct-tctttttaaggagtttaaaattaataaaatatgaccaaa 151  Q
    |||||||| |||||| ||||||||||||| ||| |||||| |||||||||| ||  |||| | |||||| |||| ||||||||||| ||||| |||||||    
T  40722951 ataaattaggtgttgatgatacaccgttaaatctgatggacctcctttatctaacagtctctttttttagggag-ttaaaattaatgaaataggaccaaa 40723049  T
Q  152 tt 153  Q
    ||    
T  40723050 tt 40723051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 62 - 209
Target Start/End: Complemental strand, 30743275 - 30743129
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||| ||||| |||||||  |||| |  ||||||||||||  ||||| ||||| |||  |||||||||||||||||  ||||||||  || |  |    
T  30743275 gtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttgttttttagggatttaaaattaataaaattggaccaaatcgatgacga 30743176  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggacca 209  Q
    |||||||||| || || ||  ||||||| ||||||||||| |||||||    
T  30743175 aaacaaagat-aaggaccaaattgaaacatttaatagttaagggacca 30743129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 58 - 173
Target Start/End: Complemental strand, 43807627 - 43807512
Alignment:
Q  58 ttatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaata 157  Q
    ||||||||||||| ||||| |||||||  |||| |  ||||||||||||  ||||||||||| |||  ||||| |||||||||||  || |||||  ||     
T  43807627 ttatgtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttcttttttagggatttaatattaataaaattggatcaaatcgatg 43807528  T
Q  158 attaaaacaaagataa 173  Q
    || |||||||||||||    
T  43807527 atgaaaacaaagataa 43807512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 206
Target Start/End: Complemental strand, 45042807 - 45042654
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaag-gagtttaaaattaataaaatatgaccaaa 151  Q
    ||||||||  ||||| |||||||| |||||||| |||  | ||| |||||||||  |||| ||||||||  ||||| |||||||| ||||||||||||||    
T  45042807 ataaattagatgttgatgatacacggttagatctgatatacctcatttatccaacggtctcctttttaaatgagtt-aaaattaacaaaatatgaccaaa 45042709  T
Q  152 ttaataattaaaacaaagataaacgatcattttgaaacgtttaatagttagggga 206  Q
    || |  |  |||||| ||||||| || || |||||||| ||||| ||||| ||||    
T  45042708 tttactaacaaaacatagataaaagaccaatttgaaacatttaacagttaaggga 45042654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 40721982 - 40721883
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaat 152  Q
    |||||||| |||||| ||||||||||||| |||  ||||| |||||||||||||   ||| |||||| ||||  ||||||||||  ||||| ||||||||    
T  40721982 ataaattaggtgttgatgatacaccgttaaatctaatggacctcctttatccaacgatctccttttt-aggaagttaaaattaacgaaataggaccaaat 40721884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 50 - 211
Target Start/End: Complemental strand, 28033 - 27871
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaat--gtcttctttttaaggagtttaaaattaataaaatatgac 147  Q
    |||||||||||||||||||||||||||  ||||||| |||||| ||| ||||||||||   |||||||||||||||  |||||||||||||||||| |||    
T  28033 aatataaattatgtgttggtgatacacttttagatctgatggacctc-tttatccaaaatagtcttctttttaagggatttaaaattaataaaataggac 27935  T
Q  148 caaattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaat 211  Q
    ||| || ||   ||||||||||||||| || |||||||||||||||||  ||||||||||||||    
T  27934 caacttgatggctaaaacaaagataaatgaccattttgaaacgtttaaccgttaggggaccaat 27871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 32302 - 32158
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacca 149  Q
    ||||| ||||||||||||||||||||  |||||||| |||||  ||| |||||||||  ||||||||| ||||| ||||||||||||||||||| |||||    
T  32302 aatatgaattatgtgttggtgatacattgttagatctgatgggcctc-tttatccaatagtcttctttctaaggggtttaaaattaataaaataggacca 32204  T
Q  150 aattaataattaaaacaaagataaacgatcattttgaaacgtttaa 195  Q
    |||| ||   |||||||||||||||  | || ||| ||||||||||    
T  32203 aattgatggctaaaacaaagataaataaccaatttaaaacgtttaa 32158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 50 - 211
Target Start/End: Complemental strand, 24794 - 24634
Alignment:
Q  50 aatataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgacca 149  Q
    |||||||||||||||||||||||||||  ||||||| |||| | || ||||||||||  ||||||||||||||   ||||||||||||| |||| |||||    
T  24794 aatataaattatgtgttggtgatacacttttagatctgatgcacct-ctttatccaatagtcttctttttaagagatttaaaattaatataataggacca 24696  T
Q  150 aattaataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaat 211  Q
    | |  ||   |||||||  ||||||  | |||| ||||||||||||  ||||||| ||||||    
T  24695 actcgatggctaaaacattgataaataaccattatgaaacgtttaaccgttagggaaccaat 24634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 53 - 210
Target Start/End: Complemental strand, 35560 - 35404
Alignment:
Q  53 ataaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaat 152  Q
    |||||||| ||||||||||||||| |||||||| |||  | ||| |||||||||  |||| ||||||| ||   ||||||| |||||||||||||||| |    
T  35560 ataaattaggtgttggtgatacacagttagatctgataaacctcatttatccaatggtctcctttttatgggtgttaaaatgaataaaatatgaccaatt 35461  T
Q  153 taataattaaaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
     ||||||  |||  ||||||||  | || ||| ||||||||||||||||| |||||||    
T  35460 gaataatggaaa-gaagataaagaaccaatttaaaacgtttaatagttagaggaccaa 35404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 62 - 209
Target Start/End: Original strand, 85004 - 85150
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||| ||||| |||||||  |||| |  || |||||||||  ||||||||||| |||  |||||||||||||||||||||||||||| || |  |    
T  85004 gtgttggtggtacacggttagatatgatgaacttcttttatccaacggtcttcttttttagggatttaaaattaataaaatatgaccaaattgatgacaa 85103  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggacca 209  Q
    ||| |||||| || || ||  |||||||| |||||||||| |||||||    
T  85104 aaataaagat-aaggaccaaattgaaacggttaatagttaagggacca 85150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 204726 - 204615
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| || ||||  |||| |  ||||||||||||  |||| |||||| |||  |||||||||||||||||| ||||||||| || |  |    
T  204726 gtgttggtgatacacggtaagatatgatgaacttcctttatccaatggtctacttttttagggatttaaaattaataaaataggaccaaattgatgacga 204627  T
Q  162 aaacaaagataa 173  Q
    ||||||||||||    
T  204626 aaacaaagataa 204615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 210
Target Start/End: Original strand, 205480 - 205627
Alignment:
Q  62 gtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataatta 161  Q
    ||||||||||||||| |||||||  |||| |  ||||||||||||  || || ||||| | |  ||| |||||||||||||| ||| ||||  || |  |    
T  205480 gtgttggtgatacacggttagatatgatgaacttcctttatccaacggtattattttttatggatttcaaattaataaaataggacgaaatcgatgacga 205579  T
Q  162 aaacaaagataaacgatcattttgaaacgtttaatagttaggggaccaa 210  Q
    |||||||||| || || ||  ||||||||||||||| ||| ||||||||    
T  205580 aaacaaagat-aaggaccaaattgaaacgtttaataattaagggaccaa 205627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 21338 - 21274
Alignment:
Q  55 aaattatgtgttggtgatacaccgttagatccgatggatctcctttatccaaatgtcttcttttt 119  Q
    ||||||||||||| |||||||||||||||||   | || ||||||||||| |  |||||||||||    
T  21338 aaattatgtgttgatgatacaccgttagatctcgtagacctcctttatccgacggtcttcttttt 21274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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