View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17103_low_2 (Length: 415)
Name: NF17103_low_2
Description: NF17103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17103_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 15 - 399
Target Start/End: Original strand, 3361151 - 3361531
Alignment:
| Q |
15 |
gaagaagattaatatttgtgtgcaagaagaaacaacaatatcatctaaagcactgaacttcatgtaattaaagccaaaccttgccatgagaatcttgccg |
114 |
Q |
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| T |
3361151 |
gaagaagattaatatttgtgtacaagaagaaacaacaatatcatctaaagcactgaacttcatgtaa----agccaaaccttgccatgtgaatcttgccg |
3361246 |
T |
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| Q |
115 |
atgatcttcaagtaaagccttcattatttcatgaagtgtctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatgatcactcttt |
214 |
Q |
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| T |
3361247 |
atgatcttcaagtaaagccttcattatttcatgaagtgtctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatgatcactcttt |
3361346 |
T |
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| Q |
215 |
aaagtggtgactgcagcgtcaagttggtcgattcttttggtcaaagcactacaacaaatttcaggccagttttcatgctcagtacaggccaaatcattct |
314 |
Q |
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| T |
3361347 |
aaagtggtgaccgcagcgtcaagttggtcgattcttttggtcaaagcactacaacaaatttcaggccagttttcatgctcaatacaggccaaatcattct |
3361446 |
T |
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| Q |
315 |
caaggcacaagagatcattttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaacacatgattc |
399 |
Q |
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| T |
3361447 |
caaggcacaagagatcattttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaacacatgattc |
3361531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 131 - 393
Target Start/End: Original strand, 35907360 - 35907622
Alignment:
| Q |
131 |
gccttcattatttcatgaagtgtctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgactgcag |
230 |
Q |
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| T |
35907360 |
gccttcactatttcatgaagtctctcagctggtccactatccaatagtagctgcacctctgcatcatcagcatgaccactcttcaaagtgttaaccgcaa |
35907459 |
T |
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| Q |
231 |
cgtcaagttggtcgattcttttggtcaaagcactacaacaaatttcaggccagttttcatgctcagtacaggccaaatcattctcaaggcacaagagatc |
330 |
Q |
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| T |
35907460 |
catcaagctggttgattttttctgtcaaaccattgcagcatatttcaggccagttttcattttcagtccaggccaattcattctgaagggacgcgagatt |
35907559 |
T |
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| Q |
331 |
attttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaacaca |
393 |
Q |
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| T |
35907560 |
catttccaattgctcaatctcattatctgcattggtgatcatacatctcaaaacctgaacaca |
35907622 |
T |
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