View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17103_low_4 (Length: 346)
Name: NF17103_low_4
Description: NF17103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17103_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 86 - 332
Target Start/End: Complemental strand, 34668560 - 34668314
Alignment:
| Q |
86 |
tataactaattagcatagtacaagatgtgtatatatacatagacaatatcggtgtgtagcattgttagatttaagacatatattagattagattagatat |
185 |
Q |
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| T |
34668560 |
tataactaattagcatagtacaagatgtgtatatatacatagacaatatcggtgtgtagcattgttagatttaagacatatattagattagattagatat |
34668461 |
T |
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| Q |
186 |
ggaggaagagaaaggcattagagggaatggcaagatggtggagaaagaaagcaagaggcagcaacgaggaggcatccgaacattacctttcatccttggt |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34668460 |
ggaggaagagaaaggcattagagggaatggcaagatggtggagaaagaaagcaagaggcagcaacgaggaggcatccgaacattacctttcatccttggt |
34668361 |
T |
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| Q |
286 |
cagtcctcacaataataaactcttaatttccattaattattgtttat |
332 |
Q |
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| T |
34668360 |
cagtcctcacaataataaactcttaatttccattaattattgtttat |
34668314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 116
Target Start/End: Complemental strand, 34668712 - 34668682
Alignment:
| Q |
86 |
tataactaattagcatagtacaagatgtgta |
116 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
34668712 |
tataactaattagcatagtacaagatgtgta |
34668682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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