View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17103_low_5 (Length: 268)
Name: NF17103_low_5
Description: NF17103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17103_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 2063332 - 2063097
Alignment:
| Q |
13 |
aatataaagatccattaaattttatgttttcctaccaaatgcatatataaaactaaaatttaacgcatgctaaacaaaaggttcacaatatatctttcaa |
112 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| ||| |
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| T |
2063332 |
aatataaagatccattaaattttattttttcctaccaaatgcatatatgaaactaaaatttaacgcatgctaaacaaatcgtttacaatatatctt-caa |
2063234 |
T |
|
| Q |
113 |
aaagttactaacagaaaatatatcaattgaaatagaaaactaaacacaaaccaaagatgcttttcggtttcaaagtagttttagttgcaagaagtcattg |
212 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| |
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| T |
2063233 |
aaagttactaaaagaaaatatatcaattgaaatagaaaactaaacacaaaccaaagctgcttttcggtttcaaggtagttttagttgc---aagtcattg |
2063137 |
T |
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| Q |
213 |
caattctcaaaggaaaccaaacatttgaaacatataggaa |
252 |
Q |
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| T |
2063136 |
caattctcaaaggaaatcaaacatttgaaacatataggaa |
2063097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 2055339 - 2055101
Alignment:
| Q |
17 |
taaagatccattaaattttatgttttcctaccaaatgcatatataaaactaaaatttaacgcatgctaaacaaaaggttcacaatatatctttcaaaaag |
116 |
Q |
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|||| |||||||||||||||| || ||||||||||| || |||| ||| |||||||| | ||||||||||| || |||| || ||| |||||||||| | |
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| T |
2055339 |
taaaaatccattaaattttatattatcctaccaaatacagatatgaaattaaaatttgatgcatgctaaactaattgttcgcattatttctttcaaaacg |
2055240 |
T |
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| Q |
117 |
tta-ctaacagaaaatatatcaattgaaatagaaaactaaacacaaaccaaagatgcttttcggtttcaaagtagttttagttgcaagaagtcattgcaa |
215 |
Q |
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| T |
2055239 |
ccatctaaatgaaaatatatcaattgaaatagaaaaccaaacacaaagcaaagatgcttttcggtttcaaagtagttttagttgc---aagtcattgcaa |
2055143 |
T |
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| Q |
216 |
ttctca-----aaggaaaccaaacatttgaaacatataggaa |
252 |
Q |
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| T |
2055142 |
ttctcagtaattaggaaatcaaacatttgaaacatataggaa |
2055101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 2059504 - 2059429
Alignment:
| Q |
13 |
aatataaagatccattaaattttatgttttcctaccaaatgcatatataaaactaaaatttaacgcatgctaaaca |
88 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
2059504 |
aatataaagatccattaaattgtatgttttcctaccaaatgcatatatgaaactaaaatttaacacatgctaaaca |
2059429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 249
Target Start/End: Complemental strand, 2059387 - 2059285
Alignment:
| Q |
149 |
aaactaaacacaaaccaaagatgcttttcggtttcaaagtagttttagttgcaagaagtcattgcaattctca-----aaggaaaccaaacatttgaaac |
243 |
Q |
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||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||| ||||||| |||||| |||||||||||||| |
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| T |
2059387 |
aaactaaacacaaaccaaatatgttttttggtttcaaagtagttttagttgc---aagtcattgtcattctcagtaattaggaaatcaaacatttgaaac |
2059291 |
T |
|
| Q |
244 |
atatag |
249 |
Q |
| |
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|||||| |
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| T |
2059290 |
atatag |
2059285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 2049242 - 2049091
Alignment:
| Q |
13 |
aatataaagatccattaaattttatgttttcctaccaaatgcatatataaaactaaaatttaacgcatgctaaacaaaaggttcacaatatatctttcaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||| || ||| ||| | |||||| | ||| || ||||| | ||||||||||| |||||||| |
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| T |
2049242 |
aatataaagatccattaaattttatgttccactatcaaatacagatacgaaaatgaaatttgaggcaagcaaaacagattgttcacaatatttctttcaa |
2049143 |
T |
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| Q |
113 |
aaagttactaacagaaaatatatcaattgaaatagaaaactaaacacaaaccaa |
166 |
Q |
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|| ||| ||| |||||||| || | ||||||||||||| ||||||||||||| |
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| T |
2049142 |
aatcttattaa--gaaaatatttccaatgaaatagaaaaccaaacacaaaccaa |
2049091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 2134585 - 2134649
Alignment:
| Q |
130 |
atatatcaattgaaatagaaaactaaacacaaaccaaagatgcttttcggtttcaaagtagtttt |
194 |
Q |
| |
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||||||| |||||||||||||| |||||||||||||| || | ||| ||||| |||| |||||| |
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| T |
2134585 |
atatatctattgaaatagaaaatgaaacacaaaccaaatatacattttggttttaaagaagtttt |
2134649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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